Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2501 ATGGATAGAGCGTTTGATACACTTGCTTCTGTTTGTTCCGGTAAAGAATCATGGCGGATCAAAGTAAGGGTTCTTCGTTTATGGAGTGTGTGCAGTTTTATGAAACCAGAGCAGGTTATCTCACTTGAAATGGTTTTGATTGATGATAAGGGTGTTAAGATCCATGCTTCTGTTCGTCGTCAATTGCTTTATTTGTTTAATTTGAAGATTGTTGAAGGTGATGTTTATAAGATGTCGTTTTTCACTGTTTGTCCAGAATCTGGAATTTACCGAACTACTCCACACCAATTTAAACTTGATTTTGAGATGAAAACAAAATTTCAGGCCTGTGAAGGTAATACCATTGATCATTTTGGATTGTCACTTTCCACCATCGCACAGATTTCTGCTTATGGTCTTGCTCATAATTTCTTAGTTGATGTTGTTGGTCTTATTATTGGTATTTCTGCTGAGAGGGAGTATATTCGGGATGGTAAGGTTACTAGGATGATTGTGGTTGAGTTGACTGAGAGTAGTGGAAAGTGTGAGTGTGCTTTGTTAAATTTGCCAAAATTAAGATTTTCAGAGGGAAAGTATCTATTCAAAATGTTTTGA 594 0.3653 MDRAFDTLASVCSGKESWRIKVRVLRLWSVCSFMKPEQVISLEMVLIDDKGVKIHASVRRQLLYLFNLKIVEGDVYKMSFFTVCPESGIYRTTPHQFKLDFEMKTKFQACEGNTIDHFGLSLSTIAQISAYGLAHNFLVDVVGLIIGISAEREYIRDGKVTRMIVVELTESSGKCECALLNLPKLRFSEGKYLFKMF* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2501 197 Pfam Domain of unknown function DUF223 43 111 IPR003871 -
Tpr4g2501 197 Gene3D - 4 110 IPR012340 -
Tpr4g2501 197 SUPERFAMILY Nucleic acid-binding proteins 5 111 IPR012340 -
Tpr4g2501 197 CDD RPA1_DBD_A_like 19 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2501 Tpr-Chr4 27040466 27042213 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2501 18 156 Core DNA Replication Machinery Family AT5G45400 25.874 4.69e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2501 - - mtr:MTR_1g075850 197.978