Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2496 ATGGCACCACCAAGTTTTGATTTTGCAAGTCTGTTTTGTCAAGAAGATAGTAGCATTTTTGATGAAAATGATTTTGGAGGTCCAAATTCATTTGAGATGTTTGATGAATCTTGGAAAGATGAATGTGATCCATACCTCAATCAAATTACACAATTTGATGACTCAACTCAGCAATTCAATGAACCAATTTTTGCGTTGGTTCCACCACCATTGCTGAGTGATGAGAGTTTGAAGGACTTGGTTGCAAATGAATGCCATCATTTGCCTGCTAGTGATTATGTCAATAGGCTGAAATATGGGGATTTGGATTTGCAGGACAGAATGGAGGCCGTTGATTGGATTGAAAAGGTTGGAGTGCATTTTGGCTTTGGACCTCTCTGTTTGTACCTAGCTGTAAGCTTCATGGATCGCTTCCTTTCTGTAGTTGAAATTCTGAAGGAAAGAACTTGGTCAATTCAACTCTTGGCTGTGGGTTGCTTGTATCTGGCAGCTAAAATCGACGAAACTGTAGTTCCTCCAACGGTTGATATGCAGATGGAAGAAAAGAAGTATTTATTTGATAACAAAACAATGCTGAAGATGGAGCTTATGGTGCTAAGCACGTTGAAGTGGAGAATGCAAGGAATTACACCTTTCTCTTACATTGACTATTTCCTTAACAAGGTTAATGGTGATCAAGGTCCAATAGGAGATTCAGTGTTGCAATCTTTCCAACTCATACAGAGTACTGCAAGAGGAATTGACTTCATTCAATTCAGACCATCTGAAATTGCAGCGGCTGTTGCAGTGACATTATCTGTGAAGGGTGAAAACCAAACTGAGAGAGCAGTTTCTCTTCTGATTGAATACGTAGAAAAGGAGAAAGTAATGAAGTGTATTGAAATGATTCAACAGCTATCATCTAGTAGTACTGATTCTGCAAAAGATACAACAAATGTTGCAAATGCTTCTTCTGAATATTTCTCTCATGTGTCTCAAAATCCAATAGATGTGTTGGAAGATATGTGCCTCAACTACAAAAGTGATGATGACAACAACAAAAATGCTACTACTTCAACACAAGCAAATTCTGCACACAATAGTCCTCAAGCTAAACGCCAGAAACCTAACATATAA 1116 0.3826 MAPPSFDFASLFCQEDSSIFDENDFGGPNSFEMFDESWKDECDPYLNQITQFDDSTQQFNEPIFALVPPPLLSDESLKDLVANECHHLPASDYVNRLKYGDLDLQDRMEAVDWIEKVGVHFGFGPLCLYLAVSFMDRFLSVVEILKERTWSIQLLAVGCLYLAAKIDETVVPPTVDMQMEEKKYLFDNKTMLKMELMVLSTLKWRMQGITPFSYIDYFLNKVNGDQGPIGDSVLQSFQLIQSTARGIDFIQFRPSEIAAAVAVTLSVKGENQTERAVSLLIEYVEKEKVMKCIEMIQQLSSSSTDSAKDTTNVANASSEYFSHVSQNPIDVLEDMCLNYKSDDDNNKNATTSTQANSAHNSPQAKRQKPNI* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2496 371 ProSitePatterns Cyclins signature. 107 138 IPR006671 -
Tpr4g2496 371 Pfam Cyclin, C-terminal domain 209 325 IPR004367 -
Tpr4g2496 371 MobiDBLite consensus disorder prediction 342 371 - -
Tpr4g2496 371 Pfam Cyclin, N-terminal domain 78 206 IPR006671 -
Tpr4g2496 371 PANTHER CARBOXY-TERMINAL DOMAIN CYCLIN 4 368 - -
Tpr4g2496 371 SUPERFAMILY Cyclin-like 190 301 IPR036915 -
Tpr4g2496 371 Gene3D - 90 207 - -
Tpr4g2496 371 SUPERFAMILY Cyclin-like 71 206 IPR036915 -
Tpr4g2496 371 SMART cyclin_7 112 200 IPR013763 -
Tpr4g2496 371 Gene3D - 77 295 - -
Tpr4g2496 371 PANTHER CYCLINS 4 368 IPR039361 -
Tpr4g2496 371 CDD CYCLIN 107 199 IPR013763 -
Tpr4g2496 371 MobiDBLite consensus disorder prediction 340 371 - -
Tpr4g2496 371 SMART Cyclin_C_2 209 330 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2496 Tpr-Chr4 26983559 26986866 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2496 74 350 Core Cell Cycle Gene Families AT2G22490 40.357 3.22e-68 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2496 K18810 - gmx:100803873 360.147
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g2496 4 26983559 26986866 Tpr4g2496 4 26983559 26986866 ECH