Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2489 ATGCTAGTAAATGAGGACAATGTTCATGTTGTTGTGGACATAGACAACAATGACTCCGGTGACCAGTCAGATGAGGATCAAATTCAAAGGTCAGAGATTGTTGGAGTGTCTGACAAACAAAGAGGATCTATTGATTCATCTGAATCAGTTGAATCAGAATGTTCTGTTGAGTTGGATCTGGATGGTGTTGTAGTTTCTGATGTTAAGGTACATTTGGATAAAGTGGAGAGAGATTGTAGGATATGTCATCTTAGTATGGATATGACAAATCATGAATCTGGAATTCCTATGGAGCTTGGTTGTTCTTGTAAGGAGGATTTGGCTGCTGCTCATAGACATTGTGCTGAAGCTTGGTTCAAGATTAAGGGAAATAAAACTTGTGAAATCTGTGGATCAATTGCACACAATGTAGCTGGTGCCATTGAAGTTCAAATGGCAGAACAGTATAATGAATCAAGTGATCCTTCCATGGTACCACCAACCGGACCTTCACCGCCATCAGAAACTCGAAATTTTTGGCAAGGACACCGATTTTTGAATTTCCTTCTTGCATGTATGGTTTTCGCCTTCGTCATATCATGGCTTTTTCACTTCAATGTTCCCTCTTGA 609 0.399 MLVNEDNVHVVVDIDNNDSGDQSDEDQIQRSEIVGVSDKQRGSIDSSESVESECSVELDLDGVVVSDVKVHLDKVERDCRICHLSMDMTNHESGIPMELGCSCKEDLAAAHRHCAEAWFKIKGNKTCEICGSIAHNVAGAIEVQMAEQYNESSDPSMVPPTGPSPPSETRNFWQGHRFLNFLLACMVFAFVISWLFHFNVPS* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2489 202 ProSiteProfiles Zinc finger RING-CH-type profile. 71 137 IPR011016 GO:0008270
Tpr4g2489 202 PANTHER ZINC FINGER, RING-CH-TYPE 9 202 - -
Tpr4g2489 202 MobiDBLite consensus disorder prediction 13 48 - -
Tpr4g2489 202 MobiDBLite consensus disorder prediction 33 48 - -
Tpr4g2489 202 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 139 IPR013083 -
Tpr4g2489 202 SUPERFAMILY RING/U-box 76 133 - -
Tpr4g2489 202 SMART ringv_2 78 131 IPR011016 GO:0008270
Tpr4g2489 202 Pfam RING-variant domain 79 130 IPR011016 GO:0008270
Tpr4g2489 202 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 9 202 - -
Tpr4g2489 202 CDD RING_CH-C4HC3_MARCH 79 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2489 Tpr-Chr4 26653227 26656857 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2489 10 202 C3H Transcription Factor Family AT5G05830 56.122 6.38e-70 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2489 - - mtr:MTR_5g081560 332.798
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g2364 6 25901507 25905795 Tpr4g2489 4 26653227 26656857 ECH
Tpr4g2489 4 26653227 26656857 Tpr4g2489 4 26653227 26656857 ECH