Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2470 ATGGATTTAGAAACCCTTTATTCTCCTTATTTTATGTTGGATTCAAATTGGTTTGTTGAAGAGAGTTACAAAACAGAATGGAGTAGAGAAGATAATAAGAAATTTGAAAGTGCTCTTGCTATATATGATAAGGATACACCAGATAGATGGTTAAAAGTTGCTGAGATGATTCCTGGTAAAACTGTTTATGATGTGATTAAGCAATATAGGGAATTGGAAGAAGATGTTTGCGAAATCGAAGCTGGAAATGTTCCGATTCCCGGTTATCTTTCTTCTTCTTTCACCTTTGAGGTTGTTGAAAATCAAAACTATGATGGAAGTAAAAGAAGACATGTAACTGTTAGAGGTTCTGATCATGAGAGGAAGAAAGGTGTTCCTTGGACTGAAGAGGAACATAGGCGTTTTCTGATGGGACTACTAAAGTATGGAAAAGGCGATTGGAGAAACATCTCTCGCAATTTCGTCGTGACAAAAACTCCAACACAAGTAGCAAGTCATGCACAAAAGTACTACATAAGGCAAAAGGTTTCATCTGGAGGCAAAGATAAAAGAAGACCAAGCATTCATGATATTACAACTGTTACTCTTACAGAAACTTCTTCTGCATCAGATAATAAGCAGAAAATGGGTTGGACTAGTAGTCACTACAATGATGGATCACTACAAGGACAAGATCTCTATGACTGCTCTTTTCATGAATCTTATGCTAAGATGAAAGTTTCCGGTTTCGCGACGGCTTCTAGAGACTTCAACAAAGAAGCTGTTTTTGGTATTCATGCACTTTAA 786 0.3677 MDLETLYSPYFMLDSNWFVEESYKTEWSREDNKKFESALAIYDKDTPDRWLKVAEMIPGKTVYDVIKQYRELEEDVCEIEAGNVPIPGYLSSSFTFEVVENQNYDGSKRRHVTVRGSDHERKKGVPWTEEEHRRFLMGLLKYGKGDWRNISRNFVVTKTPTQVASHAQKYYIRQKVSSGGKDKRRPSIHDITTVTLTETSSASDNKQKMGWTSSHYNDGSLQGQDLYDCSFHESYAKMKVSGFATASRDFNKEAVFGIHAL* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2470 261 CDD SANT 126 170 IPR001005 -
Tpr4g2470 261 Gene3D - 125 176 - -
Tpr4g2470 261 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 3 211 - -
Tpr4g2470 261 SUPERFAMILY Homeodomain-like 121 175 IPR009057 -
Tpr4g2470 261 Gene3D - 19 86 - -
Tpr4g2470 261 ProSiteProfiles Myb-like domain profile. 119 171 IPR001005 -
Tpr4g2470 261 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 3 211 IPR043363 -
Tpr4g2470 261 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 119 175 IPR017930 -
Tpr4g2470 261 ProSiteProfiles SANT domain profile. 127 175 IPR017884 -
Tpr4g2470 261 SUPERFAMILY Homeodomain-like 25 79 IPR009057 -
Tpr4g2470 261 ProSiteProfiles SANT domain profile. 22 76 IPR017884 -
Tpr4g2470 261 SMART sant 123 173 IPR001005 -
Tpr4g2470 261 SMART sant 23 75 IPR001005 -
Tpr4g2470 261 CDD SANT 26 72 IPR001005 -
Tpr4g2470 261 Pfam Myb-like DNA-binding domain 25 71 IPR001005 -
Tpr4g2470 261 Pfam Myb-like DNA-binding domain 126 170 IPR001005 -
Tpr4g2470 261 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 122 174 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2470 Tpr-Chr4 26448262 26450661 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr4g2470 Myb_DNA-binding 1e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2470 - - cam:101492144 464.536