Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2460 ATGGAAGAGAGCATGTCAGGCTTTTGCATGAGATCATCTGGAAGTAAAAGTGGGAGCAGCAGCAACAGCAGTGGCACAAAGTGTGGACGTTGGAATCCAACAACAGAACAAGTTAAACTTCTGACTGAACTTTTCAGAGCAGGGCTCAGAACTCCAAGCACTGATCAAATTCAAAAAATATCCAATCAACTTAGTTTTTATGGTAAGATTGAGAGCAAGAATGTGTTCTATTGGTTTCAAAATCATAAAGCTCGGGAAAGACAAAAACGTAGGAAGGTTTCTTTTGATTATGACAAGGATGTCTTCATTCATAGAGATCACAACTCTATCAATGCTTCAACACAAAGGTTTGTTGAGATGTACTCAGAGCCTGATAGGGTGATTGAGACTCTTGAGCTTTTTCCATTGAACTCATTTGGTGAATCAGAACCATCAGAGAAGCTGAATATGCATATAAATGAATGCATGGAAAATAATACAATGTTTGCATACACATGTACAATGGGAGAACAAATGGAGCATCCACCATTAGACTTGCGGTTGAGCTTTGTGTAA 555 0.3874 MEESMSGFCMRSSGSKSGSSSNSSGTKCGRWNPTTEQVKLLTELFRAGLRTPSTDQIQKISNQLSFYGKIESKNVFYWFQNHKARERQKRRKVSFDYDKDVFIHRDHNSINASTQRFVEMYSEPDRVIETLELFPLNSFGESEPSEKLNMHINECMENNTMFAYTCTMGEQMEHPPLDLRLSFV* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2460 184 CDD homeodomain 30 90 IPR001356 GO:0003677
Tpr4g2460 184 PANTHER WUSCHEL-RELATED HOMEOBOX 7 1 170 - -
Tpr4g2460 184 MobiDBLite consensus disorder prediction 8 29 - -
Tpr4g2460 184 ProSiteProfiles 'Homeobox' domain profile. 24 89 IPR001356 GO:0003677
Tpr4g2460 184 Pfam Homeodomain 28 88 IPR001356 GO:0003677
Tpr4g2460 184 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 1 170 IPR044555 GO:0003700|GO:0099402
Tpr4g2460 184 SUPERFAMILY Homeodomain-like 21 92 IPR009057 -
Tpr4g2460 184 SMART HOX_1 26 93 IPR001356 GO:0003677
Tpr4g2460 184 Gene3D - 27 95 - -
Tpr4g2460 184 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2460 Tpr-Chr4 26313575 26314931 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2460 18 184 Wox Gene Family AT3G11260 55.307 3.66e-60 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Tpr4g2460 Homeodomain 5.7e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2460 - - cam:101494967 270.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g0912 7 8223251 8224159 Tpr4g2460 4 26313575 26314931 PCT