Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2458 ATGGCGGCAAGTAACCGCACAGTATTGCAATTCTCGTCTTCAAAGACCTTATCCGGAAAAGTTCATCCTCTCGTTATCTTCAACATCTGTGATTCCTATGTCCGTCGTCCTGACCAAGCAGAGCGCGTCATCGGAACACTACTCGGTTCCGTTCTTCCTGACGGAACCGTTGATATCCGTAATTCATACGCCGATCTTCACAACGAGATCGGTGATCAGGTTCTTTTGGATATTGAGTACCACCAGAATATGTTACTATCCCACCAAAAAGTGAATCCCAAGGAAGTTATAGTTGGATGGTATTCAACTGGTCTTGGAGTAACTGGTGGCAGTGCATTAATCCATGACTTTTATTCTCGAGAAGTATCCAACCCCATACATTTGACTGTCGATACAGGATTTGCAAATGGAGAGGGCACCATAAAAGCATATGTTTCAAACAATTTATCTCTTGGAGACCAGCAAATTGCTGCACAGTTTCAAGAAATTCCTTTGGATCTTCGTATGGTTGAAGCTGAACGCATTGGATTTGATAATCTGAAATCAACTTATGTTGATAAAATCCCATCTGAATTAGAAGGGATGGAAGCATCAATGACACATCTACTGGCTTTGATTGATGACACCTACAAATACGTTGATGATGTTGTGGAAGGGCGTGTTGATCCAGACAACAAAATTGGGAAATGTATATCAGATGCTGTAGGTTCCCTCCCCAAAATCCCCTCCTCGGCTTTTCATAAGCTTGTGGATGACAGCTTGGAGGATCATTTGCTCATGCTATACTTATCTAGCATCACAAGGACACAGCTCAGCCTGGCTGAAAAATTGAACACGGCTGCTCAGATTCTATGA 855 0.4269 MAASNRTVLQFSSSKTLSGKVHPLVIFNICDSYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYADLHNEIGDQVLLDIEYHQNMLLSHQKVNPKEVIVGWYSTGLGVTGGSALIHDFYSREVSNPIHLTVDTGFANGEGTIKAYVSNNLSLGDQQIAAQFQEIPLDLRMVEAERIGFDNLKSTYVDKIPSELEGMEASMTHLLALIDDTYKYVDDVVEGRVDPDNKIGKCISDAVGSLPKIPSSAFHKLVDDSLEDHLLMLYLSSITRTQLSLAEKLNTAAQIL* 285
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2458 284 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 20 120 IPR000555 GO:0005515|GO:0008233|GO:0008237
Tpr4g2458 284 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 18 283 - -
Tpr4g2458 284 Gene3D Cytidine Deaminase, domain 2 6 184 - -
Tpr4g2458 284 Pfam Maintenance of mitochondrial structure and function 171 277 IPR024969 -
Tpr4g2458 284 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F 18 283 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Tpr4g2458 284 ProSiteProfiles MPN domain profile. 19 150 IPR037518 -
Tpr4g2458 284 CDD MPN_eIF3f 20 277 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Tpr4g2458 284 SMART pad1_6 18 149 IPR000555 GO:0005515|GO:0008233|GO:0008237
Tpr4g2458 284 Hamap Eukaryotic translation initiation factor 3 subunit F [EIF3F]. 17 280 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Tpr4g2458 Tpr-Chr4 26296958 26301174 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2458 2 284 Eukaryotic Initiation Factors Gene Family AT2G39990 70.103 7.65e-143 401
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2458 K03249 - gmx:100786716 479.174