Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2452 ATGGCTCTAGAGCAACCAAGCCGTGTAGATCCAAAAATCTGGCAGAGTTGTGCCGGCGACACGGTCAAAATTCCAAAACTACATTCCAAAGTTTACTATTTCCCACTAGGGCACTTGGAACACGCAAACCCTACTCCAAACACTGAATCACTTTCACTTATCAATAGTTACCGTCCATTCATTCCATGCATCATCTCATCCGTTGATCTCCTCGCCGATCCTCAAACCGATGAAGTCTTTACTAAACTGCTCTTAACTCCCGTCATTGACGGTAGTACAGTTGAACCTTTTGAGGTTCATGATGATGATGATGGAGGTGATGATGATGTTGTTTCGTCTGGCAAGACTCTTAGTCAATCTGATGCTAATAACGGCGGTGCATTCTCCGTACCTAGCAAATGCGCCAAATTGATCTTCCCACCACTTGATTTGGAAGCCAAATTGCCCACTCAGGAACTCTCCATCGCCGATGTTCACGGTAATGTCTGGGAGTTTCGCCATGTCTACCGTGGGAATCCAAAGAGACACATGTTCACTCATAACTGGAGTCAATTCGTTGACAAGAAGAAACTTGTAGGTGGTGATTCCCTTCTTTTTATGAAAAATTCGGCTGGAGAGATCTATGTTGGAATTCGTCGGGTCAAAAAGTTTGCTACTCCTGCTGTTATGCAAAAGAAGGAATCAGTGGTTATAGAGGCGGTGAAATTGGCGGAAAAGAACGAGGCGTTTGAAGTTGTGTACTATCCGACCGCTGATGATGGTGATAATTTTGTAGTGGATGCTAATGTTGTGGAGGATGCAATGAAGATTAATTGGAATTGTGGAATGAGAGTTAAACGCTCTTTGAATAATGATGATTCTTCAATATCTTTGCAGCATGGGACAATCACTAATCTTTGTGCTCCTTCTGATCGTCCATGGCACATGCTTCAGCTTAAAGTTACTGAAGATCCTGCTGCTTTATTAAGTGATATACAAGGAGACTCCTCCATTCCAATAATAGAGTTTCAACATTCAACAATGGAAAAGTTTGTCGATCCCAACAACTGCGACACTAAAAATGTTACTCGTTCTTTCAAGCTATTTGGTACTATCATACAAGTTGGAAGTGATTTGCCTAATTCTGAAATCAAGGAAGATGATAGTTGTTAG 1152 0.4193 MALEQPSRVDPKIWQSCAGDTVKIPKLHSKVYYFPLGHLEHANPTPNTESLSLINSYRPFIPCIISSVDLLADPQTDEVFTKLLLTPVIDGSTVEPFEVHDDDDGGDDDVVSSGKTLSQSDANNGGAFSVPSKCAKLIFPPLDLEAKLPTQELSIADVHGNVWEFRHVYRGNPKRHMFTHNWSQFVDKKKLVGGDSLLFMKNSAGEIYVGIRRVKKFATPAVMQKKESVVIEAVKLAEKNEAFEVVYYPTADDGDNFVVDANVVEDAMKINWNCGMRVKRSLNNDDSSISLQHGTITNLCAPSDRPWHMLQLKVTEDPAALLSDIQGDSSIPIIEFQHSTMEKFVDPNNCDTKNVTRSFKLFGTIIQVGSDLPNSEIKEDDSC* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2452 383 Gene3D - 113 215 IPR015300 -
Tpr4g2452 383 SUPERFAMILY DNA-binding pseudobarrel domain 110 215 IPR015300 -
Tpr4g2452 383 ProSiteProfiles B3 DNA-binding domain profile. 113 215 IPR003340 GO:0003677
Tpr4g2452 383 Pfam B3 DNA binding domain 115 213 IPR003340 GO:0003677
Tpr4g2452 383 SMART B3_2 115 215 IPR003340 GO:0003677
Tpr4g2452 383 CDD B3_DNA 115 213 IPR003340 GO:0003677
Tpr4g2452 383 Pfam Auxin response factor 233 307 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Tpr4g2452 383 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 228 311 IPR044835 GO:0003677|GO:0006355|GO:0009725
Tpr4g2452 383 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 220 IPR044835 GO:0003677|GO:0006355|GO:0009725
Tpr4g2452 383 PANTHER AUXIN RESPONSE FACTOR 6 220 - -
Tpr4g2452 383 PANTHER AUXIN RESPONSE FACTOR 228 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2452 Tpr-Chr4 26239916 26241919 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2452 9 326 B3 DNA Binding Superfamily AT1G77850 38.504 1.47e-78 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Tpr4g2452 B3 2.8e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2452 - - mtr:MTR_5g040740 404.06