Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2436 ATGGATTTAGAAACCCTTTATTCTCCTTATTTTATGTTGGATTCAAATTGGTTTGTTGAAGAGAGTTACAAAACAGAATGGAGTAGAGAAGATAATAAGAAATTTGAAAGTGCTCTTGCTATATATGATAAGGATACACCAGATAGATGGTTAAAAGTTGCTGAGATGATTCCTGGTAAAACTGTTTATGATGTGATTAAGCAATATAGGGAATTGGAAGAAGATGTTTGCGAAATCGAAGCTGGAAATGTTCCGATTCCCGGTTATCTTTCTTCTTCTTTCACCTTTGAGGTTGTTGAAAATCAAAACTATGATGGAAGTAAAAGAAGACATGTAACTGTTAGAGGTTCTGATCATGAGAGGAAGAAAGGTGTTCCTTGGACTGAAGAGGAACATAGGCGTTTTCTGATGGGACTACTAAAGTATGGAAAAGGCGATTGGAGAAACATCTCTCGCAATTTCGTCGTGACAAAAACTCCGACACAAGTAGCAAGTCATGCACAAAAGTACTACATAAGGCAAAAGGTTTCATCTGGAGGCAAAGATAAAAGAAGACCAAGCATTCATGATATTACAACTGTTACTCTTACAGAAACTTCTTCTGCATCAGATAATAAGCAGAAAATGGGTTGGACTAGTAGTCACTACAATGATGGATCACTACAAGGACAAGATCTCTATGACTGCTCTTTTCATGAATCTTATGCTAAGATGAAAGTTTCCGGTTTCGCGACGGCTTCTAGAGACTTCAACAAAGAAGCTGTTTTTGGTATTCATGCACTTTAA 786 0.369 MDLETLYSPYFMLDSNWFVEESYKTEWSREDNKKFESALAIYDKDTPDRWLKVAEMIPGKTVYDVIKQYRELEEDVCEIEAGNVPIPGYLSSSFTFEVVENQNYDGSKRRHVTVRGSDHERKKGVPWTEEEHRRFLMGLLKYGKGDWRNISRNFVVTKTPTQVASHAQKYYIRQKVSSGGKDKRRPSIHDITTVTLTETSSASDNKQKMGWTSSHYNDGSLQGQDLYDCSFHESYAKMKVSGFATASRDFNKEAVFGIHAL* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2436 261 CDD SANT 126 170 IPR001005 -
Tpr4g2436 261 Gene3D - 125 176 - -
Tpr4g2436 261 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 3 211 - -
Tpr4g2436 261 SUPERFAMILY Homeodomain-like 121 175 IPR009057 -
Tpr4g2436 261 Gene3D - 19 86 - -
Tpr4g2436 261 ProSiteProfiles Myb-like domain profile. 119 171 IPR001005 -
Tpr4g2436 261 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 3 211 IPR043363 -
Tpr4g2436 261 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 119 175 IPR017930 -
Tpr4g2436 261 ProSiteProfiles SANT domain profile. 127 175 IPR017884 -
Tpr4g2436 261 SUPERFAMILY Homeodomain-like 25 79 IPR009057 -
Tpr4g2436 261 ProSiteProfiles SANT domain profile. 22 76 IPR017884 -
Tpr4g2436 261 SMART sant 123 173 IPR001005 -
Tpr4g2436 261 SMART sant 23 75 IPR001005 -
Tpr4g2436 261 CDD SANT 26 72 IPR001005 -
Tpr4g2436 261 Pfam Myb-like DNA-binding domain 25 71 IPR001005 -
Tpr4g2436 261 Pfam Myb-like DNA-binding domain 126 170 IPR001005 -
Tpr4g2436 261 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 122 174 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2436 Tpr-Chr4 26095077 26097481 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr4g2436 Myb_DNA-binding 1e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2436 - - cam:101492144 464.536
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g2320 6 25378150 25381159 Tpr4g2436 4 26095077 26097481 ECH
Tpr4g2652 4 29433273 29436316 Tpr4g2436 4 26095077 26097481 ECH
Tpr3g3768 3 42058349 42061221 Tpr4g2436 4 26095077 26097481 ECH
Tpr4g2436 4 26095077 26097481 Tpr4g2436 4 26095077 26097481 ECH