Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2428 ATGCCTTCTTCTTCTCCTACCTTGTTCTCAAAATGTACTATAATCCCTGACCAAAAATCCACTATTGGAAACCTTAAACTCTCTGTTTCAGATCTTCCTATGCTTTCTTGTCACTACATCCAAAAAGGTTGTCTCTTCACAAAACCATCAATTCCCTTTCATAATCTAATTGCTATCATCAAAACTGCTCTATCTAGAACTCTCTCAATCTTTCCACCTCTCGCCGGTCGTTTAACCACTGACTCGGACGGTTATGTTTACATAACCTGCAACGATGCTGGCGTCGATTTTATCACTGCCATTGCCACTGAACTCTACATCCATGATCTTTTATCGACCATGGATGTAAATGAGTCTTTCAAAGAATTTTTTACTTTTGATCGGAAAGTTAGTTACAGCGGCCATTATTCTCCAATAATGGCCGTTCAGGTAACTGAACTTTCCGACGGTATTTTTATCGGCTGTGCCGTTAATCATGCTGTCACCGACGGTACTTCCTTCTGGAATTTCTTCAATACATTTGCACAATTATGCAGAGGAGCAAACAAATGTATCAGAAATTCTCCAAGCTTCCGTCGCGACTCTGTTTTAATCTCAAACGCTGTTCTCCGGTTACCGGAGGGAGGTCCGGTAGTGACATTCAACGCCGACGCTCCAATTCGAGAAAGAATCTTTAGCTTCAGCAGAGAAGCAATTCAGAAACTCAAAGGCAGAGCTAATAACCGTCGCTGGACGGAAAATAACAACGCCGTTGAATTGATGCAGAAACACATGAACGATCACTATAACAATAACAACAACAATAAAGAAAACGGTAACGGTAAGGTAGCGACGTTAATTGAAAATTGGTTTAAAACCAATGTTAATTCAAAACAACAAACGGTTACCGTAACAGAAACAGAAACGGTTGAGATTTCATCTTTTCAATCTCTATGCGCGTTACTATGGCGTGCAGTCACGCGCGCGAGGAAATTTCATCCATCCAAAACAACTACTTTTAGAATGGCGGTTAATTGTAGACACCGTGTTAAACCGGAGCTAGAATCATTTTATTTCGGAAACGCTATCCAGAGTGTTCCGACTTACGCTTCCGCTGGAGACGTAATGTCGAAAGACATACGGTGGTGTGCGGAGCAGCTGAATAAAAACGTGAAGGCGCATGATAATGGTATGGTGAGGAAGTTTGTAGAGGATTGGGAGAACAATCCAAGGTGTTTTCCATTGGGGAATCCTGATGGTGGTTCTATAACAATGGGTAGTTCTCCGAGGTTTCCAATGTACGATAATGATTTTGGTTGGGGAAAACCGTTAGCGGTTAGGAGTGGGAAAGCGAATAAATTTGACGGTAAGATTTCGGCGTTTCCGGGGAGAGATGGAAGTGGGACCGTTGATTTAGAGGTTGTTTTGGCGCCAGAAACTATGGCGGGGCTTGAGAATGATGCTGAGTTTATGGTTTATGCTACTAGGCAGTTATGA 1476 0.4228 MPSSSPTLFSKCTIIPDQKSTIGNLKLSVSDLPMLSCHYIQKGCLFTKPSIPFHNLIAIIKTALSRTLSIFPPLAGRLTTDSDGYVYITCNDAGVDFITAIATELYIHDLLSTMDVNESFKEFFTFDRKVSYSGHYSPIMAVQVTELSDGIFIGCAVNHAVTDGTSFWNFFNTFAQLCRGANKCIRNSPSFRRDSVLISNAVLRLPEGGPVVTFNADAPIRERIFSFSREAIQKLKGRANNRRWTENNNAVELMQKHMNDHYNNNNNNKENGNGKVATLIENWFKTNVNSKQQTVTVTETETVEISSFQSLCALLWRAVTRARKFHPSKTTTFRMAVNCRHRVKPELESFYFGNAIQSVPTYASAGDVMSKDIRWCAEQLNKNVKAHDNGMVRKFVEDWENNPRCFPLGNPDGGSITMGSSPRFPMYDNDFGWGKPLAVRSGKANKFDGKISAFPGRDGSGTVDLEVVLAPETMAGLENDAEFMVYATRQL* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2428 491 SUPERFAMILY CoA-dependent acyltransferases 37 180 - -
Tpr4g2428 491 Gene3D - 7 204 IPR023213 -
Tpr4g2428 491 Pfam Transferase family 7 484 - -
Tpr4g2428 491 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 6 486 - -
Tpr4g2428 491 Gene3D - 219 483 IPR023213 -
Tpr4g2428 491 PANTHER ANTHOCYANIN 5-AROMATIC ACYLTRANSFERASE 6 486 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2428 Tpr-Chr4 25945678 25947499 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2428 59 479 Monolignol Biosynthesis Gene Families AT5G48930 25.799 8.60e-35 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2428 - - gmx:100500612 774.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g0910 7 8181834 8183409 Tpr4g2428 4 25945678 25947499 ECH
Tpr4g2428 4 25945678 25947499 Tpr4g2428 4 25945678 25947499 ECH