Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2425 ATGGAAGAGAGCATGTCAGGCTTTTGCATGAGATCATCTGGAAGTAAAAGTGGGAGCAGCAGTGGCACAAAGTGTGGACGTTGGAATCCAACAACAGAACAAGTTAAACTTCTGACTGAACTTTTCAGAGCAGGGCTCAGAACTCCAAGCACTGATCAAATTCAAAAAATATCCAATCAACTTAGTTTTTATGGTAAGATTGAGAGCAAGAATGTGTTCTATTGGTTTCAAAATCATAAAGCTCGGGAAAGACAAAAACGTAGGAAGGTTTCTTTTGATGATGACAAGGATGTCTTCATTCATAGAGATCACAACTCTATCAATGCTTCAACACAAAGGTTTGTTGAGATGTACTCAGAGCCTGATAGGGTGATTGAGACTCTTGAGCTTTTTCCATTGAACTCATTTGGTGAATCAGAACCATCAGAGAAGCTGAATATGCATATAAATGAATGCATGGAAAATAATACAATGTTTGCATACACATGTACAATGGGAGAACAAATGGAGCATCCACCATTAGACTTGCGGTTGAGCTTTGTGTAA 546 0.3864 MEESMSGFCMRSSGSKSGSSSGTKCGRWNPTTEQVKLLTELFRAGLRTPSTDQIQKISNQLSFYGKIESKNVFYWFQNHKARERQKRRKVSFDDDKDVFIHRDHNSINASTQRFVEMYSEPDRVIETLELFPLNSFGESEPSEKLNMHINECMENNTMFAYTCTMGEQMEHPPLDLRLSFV* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2425 181 SMART HOX_1 23 90 IPR001356 GO:0003677
Tpr4g2425 181 Gene3D - 24 92 - -
Tpr4g2425 181 ProSiteProfiles 'Homeobox' domain profile. 21 86 IPR001356 GO:0003677
Tpr4g2425 181 MobiDBLite consensus disorder prediction 1 26 - -
Tpr4g2425 181 CDD homeodomain 27 87 IPR001356 GO:0003677
Tpr4g2425 181 Pfam Homeodomain 25 85 IPR001356 GO:0003677
Tpr4g2425 181 MobiDBLite consensus disorder prediction 8 26 - -
Tpr4g2425 181 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 1 167 IPR044555 GO:0003700|GO:0099402
Tpr4g2425 181 SUPERFAMILY Homeodomain-like 26 88 IPR009057 -
Tpr4g2425 181 PANTHER WUSCHEL-RELATED HOMEOBOX 7 1 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2425 Tpr-Chr4 25920334 25921784 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2425 1 181 Wox Gene Family AT3G11260 53.886 9.88e-59 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Tpr4g2425 Homeodomain 5.5e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2425 - - cam:101494967 274.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g2425 4 25920334 25921784 Tpr4g2425 4 25920334 25921784 ECH