Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2424 ATGGCGGCAAGTAACCGCACAGTGTTGCAATTCTCGTCTTCAAAGACCTTATCCGGAAAAGTTCATCCTCTCGTTATCTTCAACATCTGTGATTCCTATGTCCGTCGTCCTGACCAAGCAGAGCGCGTCATCGGAACACTACTCGGTTCCGTTCTTCCTGACGGAACCGTTGATATCCGTAATTCATACGCCGATCTTCACAACGAGATCGGTGATCAGGTTCTTTTGGATATTGAGTACCACCAGAATATGTTACTATCCCACCAAAAAGTGAATCCCAAGGAAGTTATAGTTGGATGGTATTCAACTGGTCTTGGAGTAACTGGTGGCAGTGCATTAATCCATGACTTTTATTCTCGAGAAGTATCCAACCCCATACATTTGACTGTCGATACAGGATTTGCAAATGGAGAGGGCACCATAAAAGCATATGTTTCAAACAATTTATCTCTTGGAGACCAGCAAATTGCTGCACAGTTTCAAGAAATTCCTTTGGATCTTCGTATGGTTGAAGCTGAACGCATTGGATTTGATAATCTGAAGTCAACTTATGTTGATAAAATCCCATCTGAATTAGAAGGGATGGAAGCATCAATGACACATCTATTGGCTTTGATTGATGACACCTACAAATACGTTGATGATGTGGTGGAAGGGCGTGTTGATCCAGACAACAAAATTGGGAAATGTATATCAGATGCTGTAGGTTCCCTCCCCAAAATCCCCTCCTCGGCTTTTCATAAGCTTGTGGATGACAGCTTGGAGGATCATTTGCTCATGCTATACTTATCTAGCATCACAAGGACACAGCTCAGCCTGGCTGAAAAATTGAACACGGCTGCTCAGATTCTATGA 855 0.4292 MAASNRTVLQFSSSKTLSGKVHPLVIFNICDSYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYADLHNEIGDQVLLDIEYHQNMLLSHQKVNPKEVIVGWYSTGLGVTGGSALIHDFYSREVSNPIHLTVDTGFANGEGTIKAYVSNNLSLGDQQIAAQFQEIPLDLRMVEAERIGFDNLKSTYVDKIPSELEGMEASMTHLLALIDDTYKYVDDVVEGRVDPDNKIGKCISDAVGSLPKIPSSAFHKLVDDSLEDHLLMLYLSSITRTQLSLAEKLNTAAQIL* 285
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2424 284 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 20 120 IPR000555 GO:0005515|GO:0008233|GO:0008237
Tpr4g2424 284 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 18 283 - -
Tpr4g2424 284 Gene3D Cytidine Deaminase, domain 2 6 184 - -
Tpr4g2424 284 Pfam Maintenance of mitochondrial structure and function 171 277 IPR024969 -
Tpr4g2424 284 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F 18 283 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Tpr4g2424 284 ProSiteProfiles MPN domain profile. 19 150 IPR037518 -
Tpr4g2424 284 CDD MPN_eIF3f 20 277 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Tpr4g2424 284 SMART pad1_6 18 149 IPR000555 GO:0005515|GO:0008233|GO:0008237
Tpr4g2424 284 Hamap Eukaryotic translation initiation factor 3 subunit F [EIF3F]. 17 280 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Tpr4g2424 Tpr-Chr4 25910261 25914118 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2424 2 284 Eukaryotic Initiation Factors Gene Family AT2G39990 70.103 7.65e-143 401
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g0911 7 8214419 8218524 Tpr4g2424 4 25910261 25914118 ECH
Tpr4g2424 4 25910261 25914118 Tpr4g2424 4 25910261 25914118 ECH