Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2417 ATGTCTCAACCGCAACCTTGCCGTGTAGATCCAAAACTCTGGCAGAGTTGCGCCGGCGACTCCATCAAAATACCAAAATTACATTCAAAAGTTTACTACTTCCCACAAGGTCACTTAGAACATTCCAATCCTTCTCCAAGCACTCAGTCACTTTCCCTTATCAATGGTTATCGTCCATTCATTCCTTGTATCATCTCCGCCATTGATCTCCTCGCTGATCCACACACCGATGAGGTCTTCGCCAAATTACTCCTTACTCCCGTAGCTGACGGCACCATTGAACCTCCTGACGTTCCCTATGAAGATCAAGAAAACAACGTTCAGGTTGTTTCGTCTTTCAAGACTCTCACCCGATCTGATGCTAATAACGGCGGTGCATTCTCAGTACCATGTGGCTGCGCTATCAAGATATTCCCTCCCCTTGATTTAAAAGCCAAACCAGCACCGTTTCAAGAGCTTTCCTTTACCGATGTTCACGGTGAAGTGTGGAAGTTTCGTCATATATACACCGGGACTCCCCAGCGACACCTGATCACCTCCGGCTGGAGTAAGTTTGTGGACAAAAAGAAACTCGTCGTTGGTGACTCTTTAATTTTCTTGAAAAATTCAGCCGGAAGGATCTTTATCGGAATTCGTAGGAAGTTTGATATCTCAAGAAGTCGGAGAATTACAGAGAAAGCGGTTACAGAGGCAGCAGAATTGGCGGATAAGAACAAGGCGTTTGAAGTTGTTTACTATCCGACGGCCCGTGGTGATAATTTTGTAGTGGATGCTAATGTTGTGGAGGATGCAATGAAGATTAATTGGAACTGTGGAATGAGAGTTAAGTTTCCTTTGAATAATGATTCTTCAAAGGGAACAATATCTAATCTACCTGCTCCTTCTAATCGTCCATGGCGAATGCTTCAGGTTAATTGGGATGAACCTAAAGTCTCAGGAAATACAAAGCGAATCAATCCTTGGATGGTTGAACCTATTTTCGACATAGCTGAATTGAATCTACATTTTCCCCAAATAAAAAGGCTTAGAGTTGATCCGGGCTTTGCCTTATCAAGGAGCACAGAGCGCGAGTCCGCCAGTACACACAACTGCAAGGCCAGTAAAGTTAGTCCCAGTTCGATTAAGCTATTTGGTAGGATCATAAAATTATCCGCCGGTGGCAATTTACCTGATTCTGGTATCAACGAAGATGGTTGTAAGGGCTGCAATGAAGTTGAAGCCATTAACAAAACTATGAAGATAACTAGCTAG 1251 0.4365 MSQPQPCRVDPKLWQSCAGDSIKIPKLHSKVYYFPQGHLEHSNPSPSTQSLSLINGYRPFIPCIISAIDLLADPHTDEVFAKLLLTPVADGTIEPPDVPYEDQENNVQVVSSFKTLTRSDANNGGAFSVPCGCAIKIFPPLDLKAKPAPFQELSFTDVHGEVWKFRHIYTGTPQRHLITSGWSKFVDKKKLVVGDSLIFLKNSAGRIFIGIRRKFDISRSRRITEKAVTEAAELADKNKAFEVVYYPTARGDNFVVDANVVEDAMKINWNCGMRVKFPLNNDSSKGTISNLPAPSNRPWRMLQVNWDEPKVSGNTKRINPWMVEPIFDIAELNLHFPQIKRLRVDPGFALSRSTERESASTHNCKASKVSPSSIKLFGRIIKLSAGGNLPDSGINEDGCKGCNEVEAINKTMKITS* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2417 416 PANTHER AUXIN RESPONSE FACTOR 5 218 - -
Tpr4g2417 416 PANTHER AUXIN RESPONSE FACTOR 221 344 - -
Tpr4g2417 416 CDD B3_DNA 113 213 IPR003340 GO:0003677
Tpr4g2417 416 Gene3D - 111 215 IPR015300 -
Tpr4g2417 416 SUPERFAMILY DNA-binding pseudobarrel domain 111 214 IPR015300 -
Tpr4g2417 416 Gene3D - 268 330 - -
Tpr4g2417 416 Pfam Auxin response factor 231 303 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Tpr4g2417 416 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 5 218 IPR044835 GO:0003677|GO:0006355|GO:0009725
Tpr4g2417 416 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 221 344 IPR044835 GO:0003677|GO:0006355|GO:0009725
Tpr4g2417 416 ProSiteProfiles B3 DNA-binding domain profile. 152 215 IPR003340 GO:0003677
Tpr4g2417 416 SMART B3_2 112 215 IPR003340 GO:0003677
Tpr4g2417 416 Pfam B3 DNA binding domain 113 214 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2417 Tpr-Chr4 25846553 25848137 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2417 8 343 B3 DNA Binding Superfamily AT1G77850 42.268 7.51e-96 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Tpr4g2417 B3 1.2e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2417 - - mtr:MTR_5g040880 397.127