Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2413 ATGGCACCAAAAGCAACCAAAGCTGAGAAGAAGCAGAACTACGATTCCAAACTGTGCCAGCTTCTAGATGAATTCAATCAGATTCTTGTTGTTAATGCTGATAATGTTGGATCTAACCAGCTTCAGAGTATTCGAAGGGGTCTTCGTGGTGATTCAGTTGTTCTTATGGGGAAGAACACTATGATGAAAAGATCTGTGAGGATGCATGCTGAGAAGACTGGAAACAATGCTTTCCTTAACCTTGTTCCTCTCCTTGTTGGAAATGTCGGTTTGATTTTCACCAAGGGTGACTTGAAGGAAGTTAGTGAGGAGGTTGCTAAGTACAAGGTTGGAGCTCCTGCTCGTGTTGGTTTGGTTGCTCCAATTGATGTTGTTGTGCCTCCTGGTAACACAGGGCTCGACCCATCCCAGACCTCTTTCTTCCAGGTGCTTAACATCCCCACCAAGATTAACAAGGGTACTGTGGAAATCATTACCCCTGTTGAACTCATCAAGAAGGGAGACAAGGTTGGATCTTCCGAAGCTGCACTGCTTGCTAAGCTAGCCATCAGGCCCTTTTCATATGGTCTTGTGGTCCTTTCTGTGTATGATAATGGCTCTGTTTTCAGTCCTGAGGTTCTTGATCTTACTGAGGATGACCTTGTTGCGAAGTTTGCCATTGGTGTTTCAATGGTTACTTCACTTTCGTTGGCCATCTCTTACCCAACACTTGCAGCTGCACCTCACATGTTCGTCAATGCCTACAAGAATGTTCTTTCTATTGCAGTGGTAACTGAATATTCTTTCCCCGAGGCTGACAAGGTTAAGGAGTTCTTGAAGGACCCAAGTAAGTTTGCTGTAGCTGCTGTTGCTGCTCCTGCTGCCGCTTCCGGTGCCGCCCCTGCTGCAGCCAAGGAGGAGGAGAAGAAGCCTGAGCCAGAAGAAGAATCTGATGAAGAAATGGGTTTTGGTCTCTTTGATGAATAG 966 0.4596 MAPKATKAEKKQNYDSKLCQLLDEFNQILVVNADNVGSNQLQSIRRGLRGDSVVLMGKNTMMKRSVRMHAEKTGNNAFLNLVPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLAIRPFSYGLVVLSVYDNGSVFSPEVLDLTEDDLVAKFAIGVSMVTSLSLAISYPTLAAAPHMFVNAYKNVLSIAVVTEYSFPEADKVKEFLKDPSKFAVAAVAAPAAASGAAPAAAKEEEKKPEPEEESDEEMGFGLFDE* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2413 321 Gene3D - 6 209 IPR043141 -
Tpr4g2413 321 Pfam Ribosomal protein L10 7 108 IPR001790 -
Tpr4g2413 321 Pfam 60s Acidic ribosomal protein 234 319 - -
Tpr4g2413 321 SUPERFAMILY Ribosomal protein L10-like 8 134 IPR043141 -
Tpr4g2413 321 MobiDBLite consensus disorder prediction 305 321 - -
Tpr4g2413 321 Gene3D - 114 185 IPR043164 -
Tpr4g2413 321 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0 1 320 - -
Tpr4g2413 321 CDD Ribosomal_P0_L10e 9 185 - -
Tpr4g2413 321 MobiDBLite consensus disorder prediction 288 321 - -
Tpr4g2413 321 PIRSF L10E 1 320 IPR030670 GO:0042254
Tpr4g2413 321 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0-1 1 320 - -
Tpr4g2413 321 Pfam Insertion domain in 60S ribosomal protein L10P 114 183 IPR040637 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2413 Tpr-Chr4 25795815 25798306 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2413 1 319 Cytoplasmic Ribosomal Protein Gene Family AT2G40010 82.445 0.0 509
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2413 K02941 - gmx:547816 501.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g2413 4 25795815 25798306 Tpr4g2413 4 25795815 25798306 ECH