Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2408 ATGAGATCTTTTATGACGTTTCTTCTCTACTTTGGTTTCCAAATATTGGTGTATTGCATGCCATTTGCAACGGTTGCTGTTGCTTTGAGTTCAAAGACTGATAAGCTTGCTTTGCTTGCATTGAAAGAAAAGCTTACAAATGGTGCACCGGATTCTCTTCCATCATGGAACGAGTCTCTACATTTCTGTGAATGGCAGGGTGTTACATGTGGTCGTCGTCATATGAGAGTCGTTGCCTTGCATTTGGAAAATCAAACATTGGGTGGTACTCTTGGACCATCCGTGGGAAATCTAACATTTCTGAGAATGCTACAACTTACAAATGTTAACTTGTATGGTGAAATTCCAAGTCAAGTTGGTCGTTTAAAGCGATTGCAAGTTCTTAACAATCTGCATGGTGAGGTTCCTATGGAGCTCACAAATTGCACGAATATCAAGGTAATTCTTTTGCGCAGCAACCGACTCAGTGGAAGAGTTCCAACATGGCTTGACTCAATGATGCAACTTACTCAGTTGAATCTTGCTACCAATAATCTAGTTGGTACTATTCCGTCTTCCGTGGGAAATGTTTCATCACTCCAAAAATTATCATTTGGAGATAATAGCTTGAAAGGAAGCATACCTTATTCTTTGGGTATGTTGTCAAGTTTGAATCTACTGATTCTAGACTCAAATAATTTATCAGGTGAAATCCCTCATTCTCTTTACAACCTATCAAATATTCAAGTTTTTGATCTTGGGCCAAACAATCTTTTCGGTAGTCTTCCATCAAATATGCATCTTGCTTTTCCCAATCTTAAAAAATTCTATATTGGATCGAACCAAATAAGTGGAACTTTTCCGTCTTCATTATTAAACCTCACTGAACTACAAGTGTTGGATATACCATACAATACTTTTGTTGGGTCAATACCTCTTACTTTGGGTCAATTAAATAAACTTGAGTCGTTTAATATTGGAGGTAATAATTTTGGGAGTGGAGGAGCTCATGATTTGGATTTTCTTTCATCGCTAACCAACTGTACTCAATTGTCAAAGATATATATTTTTGACAATGGATTTGGTGGTGTGTTGCCGAACATTATAGGAAACTTTTCCACCCATCTCCGTTTGCTTCATATGGAATATAATCAAATACATGGAGTGATACCAGAAAGAATTGGACAACTAATTGGTTTAACTGACTTAGAAATTGGAAACAATTTCCTAGAGGGAACAATTCCAGATTCAATAGGAAATCTTAAGGATATAGGATCATTGGGCTTTCAAGATAACAAATTATCTGGTAACATCCCTATAGTCATTGGTAATCTTACCATGTTATCCGAACTAGATCTATCTGGAAACAAATTGGAAGGAAGCATTCCAATTTCAATAAGAAATTGCACCAAAATGCAGAAGTTAAGTTTCTCTAGTAACAAATTGAGTGGTCATATGCCCGATCAAACATTTGGCTATCTAGATGGTTTAATTTATCTTGACTTGTCCAACAACTCCTTCACCGGCCCTATTCCTTCAGAGTTTGGTAACTTGAAACATATTTCGCAATTGAATCTAAGCTTAAATAAATTGTCTGGTGAAATTCCTAACGATTTAGCTTCTTGCTTAGATTTGACACAGCTTGTGTTGGGTGGAAACTTCTTCCATGGAACTATACCTTTGTTCTTGGGCTCCTCTTTAAGATCACTTGAAATCATAGACCTTTCTAGCAATAATTTCTCAAGCATAATCCCATTTGAACTAGAAAATCTAACATATTTGTATAAGTTGGACTTATCATTTAACAATCTCTATGGTGAGGTTCCCTTAGGAGGTGTCTTTAGCAATGTCACAACAATTTCACTAACTGGAAATAAGAATCTTTGTGGAGGGATACCTCAATTGAAGCTTCCTAAATGTTTTAGGGCGCCTTCCAAGAAACACAAAAAATCTCTCAAAAAGAAACTTATCCTCATTAGTGTAATTGGTGGGATTTTGTTCTCTTTCATAGCTTTTATAACTGTCCATTTCCTTACGAGAAAAACCAAAAGGTTACCTTCTTCACCATCTTTGCAAAACGGGAACTTGAGGGTTACTTATGGTGAATTACATGAAGCAACCAATGGTTTTTCTTCATCTAACTTGGTAGGAGCAGGAAGCTTTGGATCTGTTTACAAAGGATCACTTCTCCACTTTGAAAGACCTATTGTTGTAAAGGTGTTGAATCTTCAAACACGTGGAGCAGCAAAGAGTTTCATGGCAGAATGCAAAGCTCTGGGAAAGATGAAGCACCGGAATCTTGTCAAGGTCCTAACTTGTTGTTCAAGTGTTGATTATAATGGTGAAGACTTTAAAGCTATAGTTTTCGAGTTCATGCCTAATGGGAGTCTAGAAAAGTTATTGTATGATAGTGAAGGGTCTGGCAATCATAATCTCAGCTTCAAACAAAGGGTAGACATTGCTATTGATGTAGCTCATGCACTTGATTATCTACACAATGATACAGAGCAAGCCGTAGTTCACTGTGATATTAAGCCAAGCAATGTTCTTCTTGATGATGACTTTGTAGCCCACTTGGGAGACTTTGGCTTAGCAAGGCTCATTCATGGAGGGATAGGACATTCAACTAATGATCAAGTTAGTTCCTCCACAATAATTAAGGGAACTATAGGATATGTTCCTCCTGAGTATGGAGCAGGTGGTCAAGTATCACTCCAGGGAGATATCTACGGCTACGGGATTCTTCTTTTAGAAATGCTCACCGGAAAGAGGCCAACAAATATCATGTTTAATGAGAATCTAAGCCTACACAAATTTTGCAAGATGAAAATCCCAGAAGGAATCCTTGAGATAGTAGATTCACATTTGCTTTTGCCATTTGTTGAAGGTCAAACAGGAATTGTTGAAAACAAAATCAAAAAGTGTTTGGTGATGTTTGCTGGAATTGGAGTTGCATGTTCAGAAGAGTTTCCTGCTCATCGAATGCTGATAAAAGATGTTATAGTTAAGCTAAATGAAATCAAATCAAAGTTTCCATGCTAG 3021 0.3717 MRSFMTFLLYFGFQILVYCMPFATVAVALSSKTDKLALLALKEKLTNGAPDSLPSWNESLHFCEWQGVTCGRRHMRVVALHLENQTLGGTLGPSVGNLTFLRMLQLTNVNLYGEIPSQVGRLKRLQVLNNLHGEVPMELTNCTNIKVILLRSNRLSGRVPTWLDSMMQLTQLNLATNNLVGTIPSSVGNVSSLQKLSFGDNSLKGSIPYSLGMLSSLNLLILDSNNLSGEIPHSLYNLSNIQVFDLGPNNLFGSLPSNMHLAFPNLKKFYIGSNQISGTFPSSLLNLTELQVLDIPYNTFVGSIPLTLGQLNKLESFNIGGNNFGSGGAHDLDFLSSLTNCTQLSKIYIFDNGFGGVLPNIIGNFSTHLRLLHMEYNQIHGVIPERIGQLIGLTDLEIGNNFLEGTIPDSIGNLKDIGSLGFQDNKLSGNIPIVIGNLTMLSELDLSGNKLEGSIPISIRNCTKMQKLSFSSNKLSGHMPDQTFGYLDGLIYLDLSNNSFTGPIPSEFGNLKHISQLNLSLNKLSGEIPNDLASCLDLTQLVLGGNFFHGTIPLFLGSSLRSLEIIDLSSNNFSSIIPFELENLTYLYKLDLSFNNLYGEVPLGGVFSNVTTISLTGNKNLCGGIPQLKLPKCFRAPSKKHKKSLKKKLILISVIGGILFSFIAFITVHFLTRKTKRLPSSPSLQNGNLRVTYGELHEATNGFSSSNLVGAGSFGSVYKGSLLHFERPIVVKVLNLQTRGAAKSFMAECKALGKMKHRNLVKVLTCCSSVDYNGEDFKAIVFEFMPNGSLEKLLYDSEGSGNHNLSFKQRVDIAIDVAHALDYLHNDTEQAVVHCDIKPSNVLLDDDFVAHLGDFGLARLIHGGIGHSTNDQVSSSTIIKGTIGYVPPEYGAGGQVSLQGDIYGYGILLLEMLTGKRPTNIMFNENLSLHKFCKMKIPEGILEIVDSHLLLPFVEGQTGIVENKIKKCLVMFAGIGVACSEEFPAHRMLIKDVIVKLNEIKSKFPC* 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2408 1006 Gene3D Phosphorylase Kinase; domain 1 666 784 - -
Tpr4g2408 1006 Pfam Leucine rich repeat 264 324 IPR001611 GO:0005515
Tpr4g2408 1006 Pfam Leucine rich repeat 464 524 IPR001611 GO:0005515
Tpr4g2408 1006 ProSitePatterns Protein kinases ATP-binding region signature. 709 732 IPR017441 GO:0005524
Tpr4g2408 1006 PANTHER LRR RECEPTOR-LIKE KINASE 29 1006 - -
Tpr4g2408 1006 SMART LRR_typ_2 214 238 IPR003591 -
Tpr4g2408 1006 SMART LRR_typ_2 511 535 IPR003591 -
Tpr4g2408 1006 SMART LRR_typ_2 487 510 IPR003591 -
Tpr4g2408 1006 SMART LRR_typ_2 438 462 IPR003591 -
Tpr4g2408 1006 SMART LRR_typ_2 584 609 IPR003591 -
Tpr4g2408 1006 SMART LRR_typ_2 560 583 IPR003591 -
Tpr4g2408 1006 Gene3D Ribonuclease Inhibitor 189 262 IPR032675 -
Tpr4g2408 1006 SUPERFAMILY L domain-like 32 324 - -
Tpr4g2408 1006 ProSiteProfiles Leucine-rich repeat profile. 562 583 IPR001611 GO:0005515
Tpr4g2408 1006 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 29 1006 - -
Tpr4g2408 1006 ProSiteProfiles Protein kinase domain profile. 703 989 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g2408 1006 Pfam Protein kinase domain 705 933 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g2408 1006 SUPERFAMILY L domain-like 367 623 - -
Tpr4g2408 1006 Pfam Leucine rich repeat N-terminal domain 32 70 IPR013210 -
Tpr4g2408 1006 Gene3D Ribonuclease Inhibitor 263 332 IPR032675 -
Tpr4g2408 1006 Gene3D Transferase(Phosphotransferase) domain 1 785 1004 - -
Tpr4g2408 1006 ProSitePatterns Serine/Threonine protein kinases active-site signature. 832 844 IPR008271 GO:0004672|GO:0006468
Tpr4g2408 1006 SUPERFAMILY Protein kinase-like (PK-like) 677 993 IPR011009 -
Tpr4g2408 1006 SMART serkin_6 703 989 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g2408 1006 Gene3D Ribonuclease Inhibitor 31 186 IPR032675 -
Tpr4g2408 1006 Gene3D Ribonuclease Inhibitor 333 642 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2408 Tpr-Chr4 25739470 25743454 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2408 28 1004 Receptor kinase-like Gene Family AT3G47570 44.008 0.0 772
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Tpr4g2408 Pkinase 4.8e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2408 - - mtr:MTR_1g029940 1375.92