Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2407 ATGAAAATTTTTATGATGTTTCTTCTCTGCTTTGCTAGCCAAATGTTGGTGTATTACATGCCATTAGCAACAGTTGCTCTATCTTTGAGTTCAGAGACAGATAAACTTGCTTTGCTTACATTGAAAGAAAAGCTTACAAATGGTGCACCAGATTCTCTTCCATCATGGAATGAGTCTCTACATTTCTGTGAATGGCAGGGTGTTACATGTGGTCGTCGTCATATGAGAGTCGTTGCCTTGCATTTGGAAAATCAAACATTGAGTGGTACTCTTGGATCATCCGTGGGAAATCTAACATTTCTAAGAATGCTACAACTTACAAATGTTAACTTGTATGGTGAAATTCCAAGTCAAGTTGGTCGTTTAAAGCGATTGCAAGTTCTTAACTTAAACAACAACAATCTTCATGGCGAGATTCCTATGGAGCTCACAAATTGCACGAATATCAAGGTAATTCATTTGCACAACAACCGACTCAGTGGAAGAATTCCGACATGGTTTGACTCAATGATGCAACTTACTCGGTTGAATCTCGCTTCCAATAAACTTGTTGGTACTATTCCATCTTCCCTAGGAAATGTTTCATCACTCCAAAAATTAACATTTTTAGAAAATCACTTGAAAGGAAGCATACCTTATTCTTTGGGTATGTTGTCAAGTTTGAAACAACTGAATCTAGGTTTAAATTATTTGTCAGGTGAAATCCCTCATTCTCTTTATAACCTATCAAATATTGAAGTTTTTATTCTTGGGTCAAACAAGCTTTCCGGTAGTCTACCAAAAAATTTGAATGTTGTTTTTCCCAATCTTATAGTTTTCTTGGTAGGACTCAACCAAAATATAAGTGGAACTTTTCCGTCTTCATTATTAAACCTCACTGAACTAATAATGTTGGATATATCATACAATACTTTTGTTGGGTCAATACCTCTTACTTTGGGTCAATTAAATAAACTTGAGTCGTTTAGTATTGGAAGTAATAATTTTGGGAGTGGAGGAGCTCATGATTTGGATTTTCTTTCATCGCTAACCAACTGTACTCAATTGTCAAAGATATATATTTTTGACAATGGATTTGGTGGTGTGTTGCCGAACATTATAGGAAACTTTTCCACCAATCTCCGTTTGCTTCATATGGAAGATAATCAAATACATGGAGTGATACCGGAAAGAATTGGAGAGCTAACTGGTTTGACTGTCTTAGACATTGGATACAATTTTCTTGAGGGAACAATTCCAGGTTCCATTGGAATGCTCAAGAATATAGTAGCATTGGGCTTCCATTATAACAAATTATCTGGTAACATCCCTATGGTCATTGGTAATCTTACTGTGCTGTCTGCACTAGATATATCTAACAATAAATTGGAAGGAAACATTCCAGTTACCATAAGAAATTGCACCCAATTGCAAGAACTAGAATTTTCAAGTAACAAATTGAGTGGTGATATTCCCACTCAAACATTTGGCTATCTAGATGGTTTAATTTATCTTGGCTTGTCCAACAACTCCTTAACCGGCCCTATTCCTTCAGAGTTTGGTAACTTGAAACATATTTCACAGTTGTATCTAAGCTTAAATAAGTTGTCTGGTGAAATTCCTAACGATTTAGCTTCTTGTATAGATTTGGCACATCTTGTGTTGGGTGGAAACTTCTTCCATGGAACTATACCTTTGTTCTTGGGCTCCTCTTTAAGATCACTTGAAATCCTAGACCTTTCTAGCAATAATTTGTCAAGCATAATCCCATTTGAACTAGAAAATCTAACATATTTGTATAAGTTGGACTTATCATTTAACAATCTCTATGGTGAGGTTCCCTTAGGAGGTGTCTTTAGCAATGTCACAACAATTTCACTAACTGGAAATAAGAATCTTTGTGGAGGGATACCTCAATTGAAGCTTCCTAAATGTTTTAGGGCGCCTTCCAAGAAACACAAAAAATCTCTCAAAAAGAAACTTATCCTCATTAGTGTAATTGGTGGGATTTTGTTCTCTTTCATAGCTTTTATAACTGTCCATTTCCTTACGAGAAAAACCAAAAGGTTACGATCTTCACCATCTTTGCAAAACGGGAACTTGAGGGTTACTTATGGTGAATTACATGAAGCAACCAATGGTTTTTCTTCATCTAACTTGGTAGGAGCAGGAAGCTTTGGATCTGTTTACAAAGGATCACTTCTCCACTTTGAAAGACCTATTGTTGTAAAGGTGTTGAATCTTCAAACACGTGGAGCAGCAAAGAGTTTCATGGCAGAATGCAAAGCTCTAGCAAATATGAAGCACCGGAATCTTGTCAAGGTCCTAACTTGTTGTTCAAGTGTTGATTATAATGGCAATGATTTCAAGGCTATTGTGTTTGAGTTCATGCCGAATGGAACTCTAGAAAACTTGTTGCAGGATATTGAAGGGTCTGAAAATCATAATCTCAGCTTCACAAAAAGGGTAGACATTGCTATTGATGTAGCTCATGCACTTGATTATCTACACAATGATACAGAGCAAGCCGTAGTTCACTGTGATATTAAGCCAAGCAATGTTCTTCTTGATGACGACTTTATAGCCCACTTGGGAGACTTTGGCTTAGCAAGGCTCATTCATGGAGGGATAGGACATTCAACTAATGATCAAATTAGTTCCTCCACAATAATTAAGGGAACTATAGGATATGTTCCTCCTGAGTATGGAGCAGGTGGTCAAGTATCACTCCAGGGAGATATCTACAGCTACGGGATTCTTCTGTTAGAAATGCTCACGGGAAAGAGACCAACAAATAACATGTTTAATGAGAATCTAAGCCTACACAAATTTTGCAAGATGAAAATTCCAGAAGGAATCCTTGAGATAGTAGATTCACATTTGCTTTTGCCATTTGTTGAAGATCAAACAGGAATTGTTGAAAACAAAATCAAAAAGTGTTTGGTGATGTTTGCTGGAATTGGAGTTGCATGTTCAGAAGAGTTTCCTGCTCATCGAATGCTGATAAAAGATGTTATAGTTAAGCTAAATGAGATCAAATCAAAGTTTCCATGTTAG 3036 0.3656 MKIFMMFLLCFASQMLVYYMPLATVALSLSSETDKLALLTLKEKLTNGAPDSLPSWNESLHFCEWQGVTCGRRHMRVVALHLENQTLSGTLGSSVGNLTFLRMLQLTNVNLYGEIPSQVGRLKRLQVLNLNNNNLHGEIPMELTNCTNIKVIHLHNNRLSGRIPTWFDSMMQLTRLNLASNKLVGTIPSSLGNVSSLQKLTFLENHLKGSIPYSLGMLSSLKQLNLGLNYLSGEIPHSLYNLSNIEVFILGSNKLSGSLPKNLNVVFPNLIVFLVGLNQNISGTFPSSLLNLTELIMLDISYNTFVGSIPLTLGQLNKLESFSIGSNNFGSGGAHDLDFLSSLTNCTQLSKIYIFDNGFGGVLPNIIGNFSTNLRLLHMEDNQIHGVIPERIGELTGLTVLDIGYNFLEGTIPGSIGMLKNIVALGFHYNKLSGNIPMVIGNLTVLSALDISNNKLEGNIPVTIRNCTQLQELEFSSNKLSGDIPTQTFGYLDGLIYLGLSNNSLTGPIPSEFGNLKHISQLYLSLNKLSGEIPNDLASCIDLAHLVLGGNFFHGTIPLFLGSSLRSLEILDLSSNNLSSIIPFELENLTYLYKLDLSFNNLYGEVPLGGVFSNVTTISLTGNKNLCGGIPQLKLPKCFRAPSKKHKKSLKKKLILISVIGGILFSFIAFITVHFLTRKTKRLRSSPSLQNGNLRVTYGELHEATNGFSSSNLVGAGSFGSVYKGSLLHFERPIVVKVLNLQTRGAAKSFMAECKALANMKHRNLVKVLTCCSSVDYNGNDFKAIVFEFMPNGTLENLLQDIEGSENHNLSFTKRVDIAIDVAHALDYLHNDTEQAVVHCDIKPSNVLLDDDFIAHLGDFGLARLIHGGIGHSTNDQISSSTIIKGTIGYVPPEYGAGGQVSLQGDIYSYGILLLEMLTGKRPTNNMFNENLSLHKFCKMKIPEGILEIVDSHLLLPFVEDQTGIVENKIKKCLVMFAGIGVACSEEFPAHRMLIKDVIVKLNEIKSKFPC* 1012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2407 1011 SMART serkin_6 708 994 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g2407 1011 Pfam Leucine rich repeat 148 206 IPR001611 GO:0005515
Tpr4g2407 1011 Pfam Leucine rich repeat 483 529 IPR001611 GO:0005515
Tpr4g2407 1011 SUPERFAMILY L domain-like 31 329 - -
Tpr4g2407 1011 ProSiteProfiles Leucine-rich repeat profile. 567 588 IPR001611 GO:0005515
Tpr4g2407 1011 ProSitePatterns Serine/Threonine protein kinases active-site signature. 837 849 IPR008271 GO:0004672|GO:0006468
Tpr4g2407 1011 Pfam Leucine rich repeat N-terminal domain 32 70 IPR013210 -
Tpr4g2407 1011 PANTHER LRR RECEPTOR-LIKE KINASE 28 1011 - -
Tpr4g2407 1011 Pfam Protein kinase domain 710 948 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g2407 1011 ProSitePatterns Protein kinases ATP-binding region signature. 714 737 IPR017441 GO:0005524
Tpr4g2407 1011 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 28 1011 - -
Tpr4g2407 1011 Gene3D Ribonuclease Inhibitor 30 190 IPR032675 -
Tpr4g2407 1011 Gene3D Transferase(Phosphotransferase) domain 1 790 1009 - -
Tpr4g2407 1011 Gene3D Phosphorylase Kinase; domain 1 671 789 - -
Tpr4g2407 1011 Gene3D Ribonuclease Inhibitor 335 647 IPR032675 -
Tpr4g2407 1011 SUPERFAMILY L domain-like 371 628 - -
Tpr4g2407 1011 Gene3D Ribonuclease Inhibitor 195 270 IPR032675 -
Tpr4g2407 1011 Gene3D Ribonuclease Inhibitor 271 334 IPR032675 -
Tpr4g2407 1011 ProSiteProfiles Protein kinase domain profile. 708 994 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g2407 1011 PRINTS Leucine-rich repeat signature 446 459 - -
Tpr4g2407 1011 PRINTS Leucine-rich repeat signature 565 578 - -
Tpr4g2407 1011 SMART LRR_typ_2 122 146 IPR003591 -
Tpr4g2407 1011 SMART LRR_typ_2 443 467 IPR003591 -
Tpr4g2407 1011 SMART LRR_typ_2 516 540 IPR003591 -
Tpr4g2407 1011 SMART LRR_typ_2 589 614 IPR003591 -
Tpr4g2407 1011 SMART LRR_typ_2 395 419 IPR003591 -
Tpr4g2407 1011 SMART LRR_typ_2 565 588 IPR003591 -
Tpr4g2407 1011 SMART LRR_typ_2 218 242 IPR003591 -
Tpr4g2407 1011 SMART LRR_typ_2 170 194 IPR003591 -
Tpr4g2407 1011 SUPERFAMILY Protein kinase-like (PK-like) 683 998 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2407 Tpr-Chr4 25726089 25729680 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2407 30 1009 Receptor kinase-like Gene Family AT3G47570 44.153 0.0 772
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Tpr4g2407 Pkinase 1.2e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2407 - - mtr:MTR_1g029940 1328.54