Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2405 ATGGGACCTGATGAAATTGATGAACCAACTTTTGATACCACACAAGATGCTTCTATATCACAAACAGATCAAGTAAATCAAGGTGTGCCATTTTGTGATGAAAAAATAAAGCCTAAAGTAGGACAAATCTTTGATACTTTAGAAGATGGTGAAATTTTTTACAAGAACTATGCACACAGTGTTGGCTTTAGCGTGCGTTGCTCATCAGAAAATAAAAATATAAATGGAGTCAAGCGTTGGAAATATTTTGTTTGCTCAAAACAAGGTTTCAAGCCAAATGAAACAAAAGATGGAGAAGGAGAACAAATTCAATCAGTAGTTAAAGCTAAGAAGAGGAGTCTTACTAGAGAAGGATGTGATGCGAAAGTTGCTTTTAAACTTTTAGAGGGAGGTAAATATGAGCTCACGCGATTTCATGAAAGTCATACACATCCACTTGCCTCACCTAGCAAGAGACAATTTCTCAGATCAGCAAGAAAAGTTAATCCTGTTCATAAGAGTATATTGCTTGCAAATGGTAATGTAAATATTGGTCCTTCAAAAACATACCAATTATTGACAGAACAACTTGGTGGTCATGAAAATGTCGGGTGCACACAGAGGGATCTACAAAATTGTTTGAGAGATTTAAAGACCTTGACTAAAGATTCTGATGCAAATGTATTTATCGATAACTTTAAGCGAAAGAAAGAATTGAATCCGTCATTTTATTTTGCTTATGAGGTAGATGTTGAAGATCAACTGAAATATGTTTTATGGGCAGATGGTATATGTAGAAAAAATTATTCATTATTTGGTGATGTGGTTTCGTTTGACACTACATATAAAACGAATAAATATTCAATGATTTTTGCCCCATTTACTGGAGTTAACCACCACAGACAATGTATCACCTTTGGAGCTGCCTTCTTAGCAGAAGAGAAAGCAGATTCATTTATTTGGTTATTTGAAAAGTTTTTGGAAGCAATGGGAGGAAATAAGCCAAATCTTATTATAACAGATCAAGATCCAGCCATGAGAGTTGCCATAGAGAGGGTATTTTCTTCCTCTTCACATAGACTTTGTATGTGGCACATTATGAAAAAGGTTTCCGAAAAGGTGGGTGTTTCTTTGAATGGTAACTCAGAGTTCAATAATAAATTTAAGTCATGTGTTTGGGGTTCAGAGACTCCGGACGAATTCGAAGCAACATGGAAATCTGTCATGATTGAGTTTGAGTTGGAAAAGAATGAATGGCTTTCACATATGTATGATATTCGAAGTATGTGGATCCCATCTTACTTTAGGGACATACTTTTGGGTGGGATATTGAGAACAACATCAAGATCTGAGAGTGAAAATTCCTTCTATGGTAATTTTTTGAATCCTAATGTTAGCTTGGTTGAATTTTGGATGAGATTTGAGTCTGCATTAGATGCTCAAAGATATAAAGAGTTACTTGCTGACAATAATTCACTTCATACTTTACCAAAATTAAAGTTAGATCGTGGTTTAGAGAGACATGGTAGAGATATTTACACACGTGAAAACTTTTACATTTTTCAAAATGAATTGTGGGCTGCATGTGTAGATTGTGGAGTTGAAAATCGGAATCAAAAGGATGGCATGGATATCTTACACATAATTGATAACAATGAAACCAATAGAAAAGTACGAGAAGTGATTTATAACATTTCTGATTCCATTTGGAATTGTTCGTGCAAAATGTTTGAAGCTCAAGGGATACCATGTAGACATATACTCTGTATTTTGAAAGGGAAAGGTTTAAATGAAATACCGAGTCAGTACATTCTAAATAGGTGGACCAAGCTGGCAACTAAACAACCTATTTTTGATGTTGATGGTAATCTCTTGGAAGGGTGTGCTGCAACTGAAAAAGAGAGTCAACTCATTTCAAAGGCATGGAACCACTTATTTAAGTGTATGCATATGGCTGGACAACATAAAGAAAAATTGCATCTTATAATTAATGAATGTGTGAAAATTGAAAAGCAATTGTTTGAGTTTGAAGGTGATTCTACACAAACAAAGAAAAAAGAATTAGAGTCTTTAATTGGATTTGAACTTCCTACCGAAGTGAATATTCGTCCACCAAAACAATCAAAGACAAAAGGAAGTGGAAAACGAATTAAAGGTGGTAAAGAGAAGGCCATCGAACAACAACAGAAAAAACCACCTCGACTTTGTAGAGCATGTGGTCAATATGTATATCATGACAGTCGCAATTGTCCTTCAAAATCATCTCCCTAA 2250 0.3484 MGPDEIDEPTFDTTQDASISQTDQVNQGVPFCDEKIKPKVGQIFDTLEDGEIFYKNYAHSVGFSVRCSSENKNINGVKRWKYFVCSKQGFKPNETKDGEGEQIQSVVKAKKRSLTREGCDAKVAFKLLEGGKYELTRFHESHTHPLASPSKRQFLRSARKVNPVHKSILLANGNVNIGPSKTYQLLTEQLGGHENVGCTQRDLQNCLRDLKTLTKDSDANVFIDNFKRKKELNPSFYFAYEVDVEDQLKYVLWADGICRKNYSLFGDVVSFDTTYKTNKYSMIFAPFTGVNHHRQCITFGAAFLAEEKADSFIWLFEKFLEAMGGNKPNLIITDQDPAMRVAIERVFSSSSHRLCMWHIMKKVSEKVGVSLNGNSEFNNKFKSCVWGSETPDEFEATWKSVMIEFELEKNEWLSHMYDIRSMWIPSYFRDILLGGILRTTSRSESENSFYGNFLNPNVSLVEFWMRFESALDAQRYKELLADNNSLHTLPKLKLDRGLERHGRDIYTRENFYIFQNELWAACVDCGVENRNQKDGMDILHIIDNNETNRKVREVIYNISDSIWNCSCKMFEAQGIPCRHILCILKGKGLNEIPSQYILNRWTKLATKQPIFDVDGNLLEGCAATEKESQLISKAWNHLFKCMHMAGQHKEKLHLIINECVKIEKQLFEFEGDSTQTKKKELESLIGFELPTEVNIRPPKQSKTKGSGKRIKGGKEKAIEQQQKKPPRLCRACGQYVYHDSRNCPSKSSP* 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2405 749 MobiDBLite consensus disorder prediction 696 726 - -
Tpr4g2405 749 SMART 26again6 563 590 IPR006564 GO:0008270
Tpr4g2405 749 Pfam FAR1 DNA-binding domain 53 147 IPR004330 -
Tpr4g2405 749 Pfam MULE transposase domain 268 362 IPR018289 -
Tpr4g2405 749 PANTHER PROTEIN FAR1-RELATED SEQUENCE 5-LIKE ISOFORM X1 16 164 - -
Tpr4g2405 749 PANTHER PROTEIN FAR1-RELATED SEQUENCE 5-LIKE ISOFORM X1 209 613 - -
Tpr4g2405 749 ProSiteProfiles Zinc finger SWIM-type profile. 556 588 IPR007527 GO:0008270
Tpr4g2405 749 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 209 613 IPR031052 GO:0006355
Tpr4g2405 749 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 16 164 IPR031052 GO:0006355
Tpr4g2405 749 Pfam SWIM zinc finger 561 581 IPR007527 GO:0008270
Tpr4g2405 749 MobiDBLite consensus disorder prediction 708 723 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2405 Tpr-Chr4 25676863 25679227 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tpr4g2405 FAR1 6.2e-19 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2405 - - soe:110798711 829.32