Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2404 ATGATGACTTTTAAGTCGACCTTTCTACTATGCTTTGCTATCAAAATGTTGGTCTACAACTGCCTTCCAATAGCAACAACAGTTGCTCTTTCTTTGAGTTCAGAGACTGATAAGCTTGCTTTGCTTGCTTTAAAAGAAAAACTTACAAACGGTGTACCGGATGCTCTGCCATCATGGAATGAGTCTTTACATTTCTGTGAATGGCAGGGTGTTACATGTGGTCGCCGTCACATGAGAGTCTCTGCTTTGCGTTTGACAAATCAAACATTGGGTGGTATTCTTGGACCATCTTTGGGAAATCTAACATTTCTCAGGGAGCTCAACCTTACAAACATCAACTTGCATGGTGAAATTCCAAAGCAAATTGGTCGTTTGAAGCGGTTGCAACTTCTAAACTTAAAAAACAACAAGCTTCAAGGAGAGATTCCTATAGAGCTTAGTAACTGCACAAATATCAAGGTAATTAATTTGCTGCAAAATCAACTCACAGGAAGAGTTCCCACATGGTTTGAATCAATGAAGAAACTTACTAGATTGTTTCTTGGTACCAATAATCTAGTTGGTACTATTCCATCTTCCCTGAAAAATCTTTCATCACTCCAAAGGTTGTCACTTACAGAAAATCACTTGGAAGGAAGGATACCTTATTCATTGGGTAGGTTGTCGAGTTTGATACTATTGTATCTAGCTTCAAATGATTTGTCAGGAACCGGAAGCTTTGGATCTGTTTACAAAGGATCACTTCTCCACTTTGAAAGACCTATTGTTGTAAAGGTGTTGAATCTTCAAACACGTGGAGCAGCAAAGAGTTTCATGGCAGAATGCAAGGCTCTAGGAAAGATGAAGCACCGAAATCTTCTAAAGATATTAACTTGTTGTTCAAGTATTGATTATAATGGCGAAGATTTCAAGGCTATTGTGTTTGACTTCATGCCTAATGGGAGTCTAGAAAACTTGTTGCATGATATTGAAGGGTCTGAAAATCATAATCTCAACTTCACACAAAGGGTAGACATTGCTCTTGATGTAGCCCATGCACTTGATTATCTTCACAATGGTACAGATCAAGTTCTAGTTCACTGTGATGTTAAGCCAAGCAATGTTCTTCTCGATGATGACATTGTAGCCCACTTGGGAGACTTTGGCTTAGCTAGGCTCATTCTTGGAGCCACGGGACATTCAAGTAAAGATCAAGTTAATTCATCTACAATTAAGGGAACTATAGGATACCTTCCTCCTGAGTATGGAGCAGGTGGTCCAGTATCACCAGAGGGAGATATCTACAGCTATGGAATTTTGCTGTTGGAAATGCTCACTGGAAAGAAGCCAACAAATAACATGTTTTATGAGAATCTAAGTCTACATAAATTTTGTAAGATGAAAATTTCAGAAGACATTCTTGACATAGTGGATTCATGTTTGCTTATTCCATTTGCCGAAGATCAGACACGGGTTGTGGAAAACAACACTAAACAATGTCTAATGATGTTTGCTGAAATAGGAGTTGCATGTTCTGAAGAATTTCCTTCTCAAAGAATGCTCATAAAAGATGTTATAGTGAAGTTGCTTGCAATTAAACAGAAGTTGTCTTGCTAA 1596 0.3828 MMTFKSTFLLCFAIKMLVYNCLPIATTVALSLSSETDKLALLALKEKLTNGVPDALPSWNESLHFCEWQGVTCGRRHMRVSALRLTNQTLGGILGPSLGNLTFLRELNLTNINLHGEIPKQIGRLKRLQLLNLKNNKLQGEIPIELSNCTNIKVINLLQNQLTGRVPTWFESMKKLTRLFLGTNNLVGTIPSSLKNLSSLQRLSLTENHLEGRIPYSLGRLSSLILLYLASNDLSGTGSFGSVYKGSLLHFERPIVVKVLNLQTRGAAKSFMAECKALGKMKHRNLLKILTCCSSIDYNGEDFKAIVFDFMPNGSLENLLHDIEGSENHNLNFTQRVDIALDVAHALDYLHNGTDQVLVHCDVKPSNVLLDDDIVAHLGDFGLARLILGATGHSSKDQVNSSTIKGTIGYLPPEYGAGGPVSPEGDIYSYGILLLEMLTGKKPTNNMFYENLSLHKFCKMKISEDILDIVDSCLLIPFAEDQTRVVENNTKQCLMMFAEIGVACSEEFPSQRMLIKDVIVKLLAIKQKLSC* 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2404 531 Pfam Protein kinase domain 236 471 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g2404 531 ProSitePatterns Serine/Threonine protein kinases active-site signature. 358 370 IPR008271 GO:0004672|GO:0006468
Tpr4g2404 531 Pfam Leucine rich repeat 175 234 IPR001611 GO:0005515
Tpr4g2404 531 Gene3D Transferase(Phosphotransferase) domain 1 312 530 - -
Tpr4g2404 531 SUPERFAMILY Protein kinase-like (PK-like) 228 520 IPR011009 -
Tpr4g2404 531 SUPERFAMILY L domain-like 34 237 - -
Tpr4g2404 531 ProSiteProfiles Protein kinase domain profile. 229 498 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g2404 531 Gene3D Phosphorylase Kinase; domain 1 240 311 - -
Tpr4g2404 531 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 24 236 - -
Tpr4g2404 531 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 231 531 - -
Tpr4g2404 531 Gene3D Ribonuclease Inhibitor 36 149 IPR032675 -
Tpr4g2404 531 SMART serkin_6 229 486 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g2404 531 Pfam Leucine rich repeat N-terminal domain 35 73 IPR013210 -
Tpr4g2404 531 PANTHER LRR RECEPTOR-LIKE KINASE 24 236 - -
Tpr4g2404 531 PANTHER LRR RECEPTOR-LIKE KINASE 231 531 - -
Tpr4g2404 531 Gene3D Ribonuclease Inhibitor 154 237 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2404 Tpr-Chr4 25636864 25640840 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2404 96 529 Receptor kinase-like Gene Family AT3G47570 40.471 3.45e-98 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Tpr4g2404 Pkinase 4.9e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2404 - - mtr:MTR_7g078340 518.464