Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2402 ATGATGACTTCTATGTCCATCTTTCTTCTCTGTTTTGCTTGCCAAATGTTGGTGTACTTCATTCCAACAGTTGCTCTTTCTTTGAGCTCAGAGACTGATAAAGTTGCTTTGCTTGCTTTGAAGGAAAAGCTTACAGACGGTTTACCAGATTCTCTGCCGTCATGGAATGAGTCTTTACATTTCTGCGAATGGCAGGGTGTTACATGTGGTCGTCGTCACATGAGAGTCTCTGCCTTACATTTGGAAAATCAAACATTGGGTGGTACTCTTGGACCATCTTTGGGAAATCTAACATTTCTCAGGATACTACAACTTCCAAATGTATTCTTGCATGGTAAAATTCCAAGTCAAGTTGGTCATTTAAAGCGACTGCAAATTCTTGACTTAAACAACAACAATCTTGACGGAGAGGTTCCTATGGAGCTCGCTAACTGCACAAGTATCAAGACAATTATTTTGTTCAAGAATCGACTCATCGGAAGAATTCCTACATGGTTTGAGTCGATGATGCAACTTACTGAGTTGAATCTTGGTGCCAATAATTTAGTTGGTACTATTCCATCTTCCTTGGGAAATGTTTCATCACTCCAGAAATTATACCTTGCTGATCAAAATCACTTGAATGGAGGCATACCTTATTCTTTGGGTATGTTGTCAAATTTGAAACAATTGACTCTTGGTTCAAATAATTTGTCAGGTGAGATCCCTCATTCTCTTTACAACTTATCAAATATTGAATATTTTGATCTCGGGGAAAACGAGTTATTCGGCAGTCTTCCATCAAATATGAATCTTATTTTTCCCAATCTTGTAGAGTTGTACGTTGGGGCCAACCAAATAACTGGGAATTTTCCTTCTTCAATATCGAACCTTACTGAATTGCAATATTTTGATATAGGAGAGAATTATTTCAATGGGCCAATACCTACTACTTTGGGTCGATTAGATAAACTTGAATTCTTTTATATTGGCACAAATAATTTTGGTAGTGGAAGGGCTCACGATTTGGACTTTATTTCCTCGTTAATCAATTGTACTCAATTGTCAACACTCATTTTTAGTGGAAACAGATTTGGAGGTGAATTGCCTGATCTTATAGGAAACTTTTCCAACCATCTTAGTTGGTTTGAGTTGGGACATAATCAAATATATGGAGAGATACCTGAGAGACTTGGACAACTTATAGGTTTAACTTACTTAGAGATTGGAAATAATTTTCTTGAGGGAACCATTCCACATTCAATCGGAAAGCTTAATAATCTCGTAGATTTGATCATGCAAAAAAACAACTTATCTGGTAATATTCCTACAAGTATTGGCAATCTTACTACCTTATCTGTACTATATCTACCCGGCAATAAATTGCAAGGAACCATTCCATTCACCCTTAGATATTGTACCAACTTACAAAAATTGAGCTTAGCTGATAACAAATTGAGTGGTGATATATCTAATCAAATATTTAGCTATCTAGACAGTTTAATATATATTTTCTTGGAAAACAACTCCTTGACCGGTCCCATTCCTTCAGAGTTTGGTAATTTGAAGCAACTTTCATTATTATATCTAAACTCAAATAAGTTGTCTGGTGAAATTCCTAAGGATCTGGCTAATTGTGTAACATTGATCGAACTTGGGTTGGCGAGAAACTTCTTGAATGGAAGTATACCTTTGTTCTTAGGCTCTTTAAGATCCCTTCAAATTTTAGACATTTCTAACAACAATTTCTCTAGCACAATACCCTTTGAACTAGAAAATCTAACATTCTTGAATACTCTAGACTTGTCTTTTAACAATTTATATGGCGAGGTTCCTAAAGGAGGTGTCTTTAGCAATGTCACGGCAATTTCACTAACTGGAAATAAGAATCTTTGTGGAGGGATACCTCAACTGAAGCTTCCTGTGTGTTTTAGGGCTCATTCTAAAAAACACAAAAGATCTCTGAAAAAGAAACTTATCGTCATCAGTGTAATTGGGGGGTTTTTGATATCTTTCATAGCCTTAACATTTGTCCATTTTCTCACGAGAAAGCCCAAAAGGTTACCTTATTCCACATCTTTGCAAAATGGGAACATGAGGGTTACTTATGGTGAGCTACATGAAGCAACCAATGGCTTTTCTTCATCCAATTTGATTGGAACAGGAAGCTTTGGTTCTGTTTATAAAGGGTCTCTTCCTTATTTTGAAAGACTTGTTGCTGTAAAGGTATTGAACCTTGAAGCACGTGGAGCAGCAAAAAGTTTCATGGCCGAATGTAATGCTCTTGGAAAGATGAAGCATCGGAATCTTGTCAAGATCCTAACTTGTTGCTCAAGTATTGATTATAATGGTGAAGATTTCAAGGCTATTGTTTTTGAGTTTATGCCTAATGGTAGTCTAGAAATGATGTTGCACAATATTGAAGGGTCTGAAAATCATAATCTCAACTTTAAACAAAGGATAGACATTGCTCTTGATGTAGCTCATGCAGTTGATTATCTTCACAATGATACAGAGCAACCCGTAGTTCATTGTGATATTAAGCCAAGCAATGTTCTCATTGATGATGATATTGTAGCCCACTTGGGAGACTTTGGCTTAGCTAGGCTCATTCATGGAGTCACAGGACATTCAAATAATGATCAAGTTATTTCCTCCACAATTATGGGAACTATAGGATATCTTCCTCCTGAATATGGAGCAGGTTGTCTAGTTTCCCCAGAGGGAGATATCTACAGTTATGGGATTCTACTATTGGAAATGGTCACTGGAAAGAGACCAATAGATACCATGTTTAATGAGAATCTAAATCTACACAAACTCTGTAAGATGAAAATTCACGAAGGAATTCTCGAGATAGTAGATTCACATTTGCTTATGCCATTTCTTGAAGATCAACGAGTTATGGAAAACAACATAAGGGAGTGTCTAGTGATGTTTGTTAAAATAGGAATAGCTTGTTCTGAAGAATTTCCTACTCAACGAATGCTCATTAAAGATGTTATAGTGAAGTTGCTTGAAATTAAACAAAAGTTGCACTGCTAG 3024 0.3634 MMTSMSIFLLCFACQMLVYFIPTVALSLSSETDKVALLALKEKLTDGLPDSLPSWNESLHFCEWQGVTCGRRHMRVSALHLENQTLGGTLGPSLGNLTFLRILQLPNVFLHGKIPSQVGHLKRLQILDLNNNNLDGEVPMELANCTSIKTIILFKNRLIGRIPTWFESMMQLTELNLGANNLVGTIPSSLGNVSSLQKLYLADQNHLNGGIPYSLGMLSNLKQLTLGSNNLSGEIPHSLYNLSNIEYFDLGENELFGSLPSNMNLIFPNLVELYVGANQITGNFPSSISNLTELQYFDIGENYFNGPIPTTLGRLDKLEFFYIGTNNFGSGRAHDLDFISSLINCTQLSTLIFSGNRFGGELPDLIGNFSNHLSWFELGHNQIYGEIPERLGQLIGLTYLEIGNNFLEGTIPHSIGKLNNLVDLIMQKNNLSGNIPTSIGNLTTLSVLYLPGNKLQGTIPFTLRYCTNLQKLSLADNKLSGDISNQIFSYLDSLIYIFLENNSLTGPIPSEFGNLKQLSLLYLNSNKLSGEIPKDLANCVTLIELGLARNFLNGSIPLFLGSLRSLQILDISNNNFSSTIPFELENLTFLNTLDLSFNNLYGEVPKGGVFSNVTAISLTGNKNLCGGIPQLKLPVCFRAHSKKHKRSLKKKLIVISVIGGFLISFIALTFVHFLTRKPKRLPYSTSLQNGNMRVTYGELHEATNGFSSSNLIGTGSFGSVYKGSLPYFERLVAVKVLNLEARGAAKSFMAECNALGKMKHRNLVKILTCCSSIDYNGEDFKAIVFEFMPNGSLEMMLHNIEGSENHNLNFKQRIDIALDVAHAVDYLHNDTEQPVVHCDIKPSNVLIDDDIVAHLGDFGLARLIHGVTGHSNNDQVISSTIMGTIGYLPPEYGAGCLVSPEGDIYSYGILLLEMVTGKRPIDTMFNENLNLHKLCKMKIHEGILEIVDSHLLMPFLEDQRVMENNIRECLVMFVKIGIACSEEFPTQRMLIKDVIVKLLEIKQKLHC* 1008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2402 1007 Gene3D Transferase(Phosphotransferase) domain 1 788 1006 - -
Tpr4g2402 1007 Pfam Leucine rich repeat N-terminal domain 31 69 IPR013210 -
Tpr4g2402 1007 Pfam Protein kinase domain 708 945 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g2402 1007 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 21 1007 - -
Tpr4g2402 1007 Pfam Leucine rich repeat 467 528 IPR001611 GO:0005515
Tpr4g2402 1007 Gene3D Phosphorylase Kinase; domain 1 671 787 - -
Tpr4g2402 1007 SMART serkin_6 706 973 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g2402 1007 ProSitePatterns Serine/Threonine protein kinases active-site signature. 835 847 IPR008271 GO:0004672|GO:0006468
Tpr4g2402 1007 Gene3D Ribonuclease Inhibitor 28 203 IPR032675 -
Tpr4g2402 1007 PANTHER LRR RECEPTOR-LIKE KINASE 21 1007 - -
Tpr4g2402 1007 ProSiteProfiles Protein kinase domain profile. 706 974 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g2402 1007 SMART LRR_typ_2 218 242 IPR003591 -
Tpr4g2402 1007 SMART LRR_typ_2 563 584 IPR003591 -
Tpr4g2402 1007 SMART LRR_typ_2 587 612 IPR003591 -
Tpr4g2402 1007 SMART LRR_typ_2 466 490 IPR003591 -
Tpr4g2402 1007 SMART LRR_typ_2 515 539 IPR003591 -
Tpr4g2402 1007 SMART LRR_typ_2 121 145 IPR003591 -
Tpr4g2402 1007 SMART LRR_typ_2 169 193 IPR003591 -
Tpr4g2402 1007 SUPERFAMILY L domain-like 371 626 - -
Tpr4g2402 1007 Gene3D Ribonuclease Inhibitor 331 645 IPR032675 -
Tpr4g2402 1007 Gene3D Ribonuclease Inhibitor 204 330 IPR032675 -
Tpr4g2402 1007 SMART LRR_sd22_2 515 538 - -
Tpr4g2402 1007 SMART LRR_sd22_2 121 144 - -
Tpr4g2402 1007 SMART LRR_sd22_2 466 493 - -
Tpr4g2402 1007 SMART LRR_sd22_2 587 615 - -
Tpr4g2402 1007 SMART LRR_sd22_2 218 244 - -
Tpr4g2402 1007 SMART LRR_sd22_2 418 444 - -
Tpr4g2402 1007 SMART LRR_sd22_2 267 293 - -
Tpr4g2402 1007 ProSitePatterns Protein kinases ATP-binding region signature. 712 735 IPR017441 GO:0005524
Tpr4g2402 1007 SUPERFAMILY Protein kinase-like (PK-like) 680 998 IPR011009 -
Tpr4g2402 1007 SUPERFAMILY L domain-like 57 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2402 Tpr-Chr4 25611625 25615037 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2402 29 1004 Receptor kinase-like Gene Family AT3G47570 43.421 0.0 764
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Tpr4g2402 Pkinase 1.7e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2402 - - mtr:MTR_1g029940 1294.64