Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2400 ATGAGGTCTTTTATGACGTTTCATCTCTACTTTAATTTCCATATGTTGGTCTATTGCATTCCATTAGCAACAGTTGCTCTTTCCTTGAGTTCAAAGACTGATAAGCTTGCTTTGCTTGCATTGAAAGAAAAGCTTACAAATGGTGCACCGGATTCTCTTCCATCATGGAATGAGTCTCTACATTTTTGTGATTGGGAGGGTGTAACATGTGGTCGTCGTCATATGAGAGTCTCTGTCTTGCATTTGGAGAATCAAACATTTGGTGGTACTCTTGGACCATCTGTGGGAAATTTAACATTTCTAAGAATACTACAACTTAAAAATGTCAATTTGTATGGTAAAATTCCAAGTCAAATTGGTCGTTTAAAGCGATTGCAAGTTCTTAACTTAAACGATAACAATCTTGATGGCGAAATTCCTATGGAGCTCACAAATTGCACAGCTATCAAGGTAATTTTCTTGCGCAGCAACCGACTCTCTGGAAGAATTCCGACATGGTTTGAGTCAATGATGCAACTTACTCAGTTGAATCTCGGTGCCAATAATCTCTTTGGTACTATTCCATCTTCTCTGGGAAATGTTTCATCACTCCAAAATTTATCACTTGCACAAAATCACTTGAAAGGAAGCATACCTTATTCTTTGGGTATGTTGTCACGTTTAAAACTACTGATTCTAGGTTCAAATAATTTGTCAGGTGAAATCCCTCATTCTCTTTACAACCTATCAAATATTCAAGTTTTTGATCTTGGGTCGAACAAGCTTTTGGGTAGTCTTCCAAAAAATTTGAATGTTGTTTTTCCCAATCTTATAGCATTCTTGATAGGATACAACCAAAAAATAAGTGGAACTTTTCCGTCTTCATTATCCAACCTCACTGAACTCCAAATGTTGGATATATCATATAATGCTTTTTTTGGGTCAATACCTCTTACTTTGGGTCAATTAAATAAACTTGAATGGTTTAATATCGGAGGTAATAATTTTGGGAGTGGAGGAGCTCATGATTTAGATTTTTTTTCATCGTTAACCAATTGTACTCAATTGTCTATGATATATATTTTTAACAATAGTTTTAGTGGTGTGTTGCCAAATCTTATAGGAAACTTTTCCACCCATCTCCGTTTGCTTAATATGGAGAATAATAAAATATATGGAGTGATACCGGAAAGAATTGGACAACTTTTTGGTTTAACTGACTTAGAAATTAGAAACAATTTCCTTGAGGGAACAATTCCAGATTCAATAGGAAAACTTAAGAATATAGTATCATTGGGCTTTGCTGATAACAAATTTTCCGGTAACATCCCTATAGTCATTGGTAATCTTACTATGTTATCCGAACTAGATCTATCTAGAAACAAATTGGAAGGAAGCATTCCAATTTCAATAAGAAATTGCACCCAATTGCAGAAGTTAAGTTTATCTAGTAACAAATTGAGTGGTTATATTCCCAATCAAACATTTGGTTATCTAGATGGTTTAATATATCTTTACTTGTACAACAACTCGTTGTCTGGTCCCATTCCTTCAGAGTTTGGTAACTTAAACCATCTTTCACAACTGTATCTAAGCTTAAATAAATTGTCCGGTGAAATTCCTAACGACTTAGCATCTTGCATATCATTGACACAACTTGGGCTGGGTGGAAACTTCTTCCATGGAACTATACCATCGTTCTTGGGCTCCTCTTTAAGGTCCCTTGAAATTTTAGATCTTTCTAGAAATAATTTCTCAAGCACAATCCCTTATGAACTAGAAAATCTAACATATTTGCATAAGTTGGACTTGTCTTTTAATAATCTTTATGGTGAGGTTCCTATGGAAGGTGTCTTTAGCAATGTCTCGGCAATTTCACTAGCTAGAAACAGGAACCTTTGTGGAGGAATACCTCAATTGAAGCTTCCTCCATGTTCTAAAGTTTCTACCAAGAAACATAAAAGATCTCTCAAAAAGAAACTTATCATCATCATTAGTGTAATTGGCGGAGTTTTGATCTCTTTCATAGCATTTTTAATCGTCTATTTTGTCACGAGAAAGCCTAAAATGTTACTTTCTTCACCATCTTTGCAAAATGGGAGCTTAAGGGTTACTTATGGTGATCTACATGATGCAACCAATGGATTTTCTTCATCCAATTTGGTAGGAACGGGAAGTTCTGGTTCTGTTTATAAAGGGCATCTTCTTCATTTTGATAGAGTTATTGCTATAAAAGTGTTGAATCTTGAAACACATGGTGCTGCAAAGAGTTTCATGGCTGAATGTAAAGCTCTAGGAAAGATGAAGCATCGGAATCTTGTAAAGATCATAACTTGTTGTTCAAGTGCTGATTACAAGGGTGATGATTTCAAGGCTATTGTTTTTGAGTTCATGTCTAACGGGAGTTTGGAAAATTTGTTGCACAACAGTGAAGATGAGTCTAAAAATCTTAGTCTAAACTTCACACAAAGGGTAGACATTGCTCTTGATGTAGCTAATGCATTGGATTATCTTCATCATAACGTAGAGCAAGTTGTAGTTCATTGTGATGTTAAACCAAGCAATGTTCTTCTTGATGATACCCTTGTTGCCCACTTAGGAGACTTTGGCATAGCTAAACTCATTCACGGAGCCATGGAGAATTCCAGTAAAGCCCAAGTCATTTCTTCCGCAATTAAGGGAACTATTGGATATGTTCCTCCAGAGTATGGAGCAGGTGGTCAAGTATCACCACATGGAGATATCTACAGCTATGGCATTCTTCTGCTAGAGATGCTCACTGCAAAGAGACCAACAGATAGCATGTTTTATGATAATCTAAATCTACACAAATTCTGCAAGATGAAAATTCCAGAAGAAATTCTCAAGATAGTGGATTCAAGTTTGCTTATGCCATTTTCTGAAGATCAGAAATTTGTTGTGAAAAACAACATTAAAGAGTGTCTAGTGATGTTTGCTAAAATAGGAATTGCGTGTTCTGAAGAATTTCCTACTCAGCGAATGATCATAAAAGATGTTATAATGAAGTTGCTTGAAATTAAACAGAAGTTGACATGCTAG 3039 0.356 MRSFMTFHLYFNFHMLVYCIPLATVALSLSSKTDKLALLALKEKLTNGAPDSLPSWNESLHFCDWEGVTCGRRHMRVSVLHLENQTFGGTLGPSVGNLTFLRILQLKNVNLYGKIPSQIGRLKRLQVLNLNDNNLDGEIPMELTNCTAIKVIFLRSNRLSGRIPTWFESMMQLTQLNLGANNLFGTIPSSLGNVSSLQNLSLAQNHLKGSIPYSLGMLSRLKLLILGSNNLSGEIPHSLYNLSNIQVFDLGSNKLLGSLPKNLNVVFPNLIAFLIGYNQKISGTFPSSLSNLTELQMLDISYNAFFGSIPLTLGQLNKLEWFNIGGNNFGSGGAHDLDFFSSLTNCTQLSMIYIFNNSFSGVLPNLIGNFSTHLRLLNMENNKIYGVIPERIGQLFGLTDLEIRNNFLEGTIPDSIGKLKNIVSLGFADNKFSGNIPIVIGNLTMLSELDLSRNKLEGSIPISIRNCTQLQKLSLSSNKLSGYIPNQTFGYLDGLIYLYLYNNSLSGPIPSEFGNLNHLSQLYLSLNKLSGEIPNDLASCISLTQLGLGGNFFHGTIPSFLGSSLRSLEILDLSRNNFSSTIPYELENLTYLHKLDLSFNNLYGEVPMEGVFSNVSAISLARNRNLCGGIPQLKLPPCSKVSTKKHKRSLKKKLIIIISVIGGVLISFIAFLIVYFVTRKPKMLLSSPSLQNGSLRVTYGDLHDATNGFSSSNLVGTGSSGSVYKGHLLHFDRVIAIKVLNLETHGAAKSFMAECKALGKMKHRNLVKIITCCSSADYKGDDFKAIVFEFMSNGSLENLLHNSEDESKNLSLNFTQRVDIALDVANALDYLHHNVEQVVVHCDVKPSNVLLDDTLVAHLGDFGIAKLIHGAMENSSKAQVISSAIKGTIGYVPPEYGAGGQVSPHGDIYSYGILLLEMLTAKRPTDSMFYDNLNLHKFCKMKIPEEILKIVDSSLLMPFSEDQKFVVKNNIKECLVMFAKIGIACSEEFPTQRMIIKDVIMKLLEIKQKLTC* 1013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2400 1012 SMART serkin_6 709 966 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g2400 1012 ProSiteProfiles Protein kinase domain profile. 709 1012 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g2400 1012 Gene3D Ribonuclease Inhibitor 31 190 IPR032675 -
Tpr4g2400 1012 Gene3D Phosphorylase Kinase; domain 1 675 790 - -
Tpr4g2400 1012 ProSitePatterns Serine/Threonine protein kinases active-site signature. 839 851 IPR008271 GO:0004672|GO:0006468
Tpr4g2400 1012 SUPERFAMILY L domain-like 32 329 - -
Tpr4g2400 1012 Gene3D Ribonuclease Inhibitor 195 269 IPR032675 -
Tpr4g2400 1012 Gene3D Ribonuclease Inhibitor 270 334 IPR032675 -
Tpr4g2400 1012 Gene3D Transferase(Phosphotransferase) domain 1 791 1011 - -
Tpr4g2400 1012 SMART LRR_typ_2 443 467 IPR003591 -
Tpr4g2400 1012 SMART LRR_typ_2 218 242 IPR003591 -
Tpr4g2400 1012 SMART LRR_typ_2 122 146 IPR003591 -
Tpr4g2400 1012 SMART LRR_typ_2 492 515 IPR003591 -
Tpr4g2400 1012 SMART LRR_typ_2 468 491 IPR003591 -
Tpr4g2400 1012 SMART LRR_typ_2 292 316 IPR003591 -
Tpr4g2400 1012 SMART LRR_typ_2 589 614 IPR003591 -
Tpr4g2400 1012 SMART LRR_typ_2 565 588 IPR003591 -
Tpr4g2400 1012 SMART LRR_typ_2 516 540 IPR003591 -
Tpr4g2400 1012 ProSiteProfiles Leucine-rich repeat profile. 567 590 IPR001611 GO:0005515
Tpr4g2400 1012 SUPERFAMILY Protein kinase-like (PK-like) 689 1003 IPR011009 -
Tpr4g2400 1012 Pfam Leucine rich repeat N-terminal domain 32 70 IPR013210 -
Tpr4g2400 1012 SUPERFAMILY L domain-like 371 628 - -
Tpr4g2400 1012 PANTHER LRR RECEPTOR-LIKE KINASE 30 1012 - -
Tpr4g2400 1012 ProSitePatterns Protein kinases ATP-binding region signature. 715 738 IPR017441 GO:0005524
Tpr4g2400 1012 Pfam Protein kinase domain 711 963 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g2400 1012 Gene3D Ribonuclease Inhibitor 335 647 IPR032675 -
Tpr4g2400 1012 PRINTS Leucine-rich repeat signature 446 459 - -
Tpr4g2400 1012 PRINTS Leucine-rich repeat signature 565 578 - -
Tpr4g2400 1012 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 30 1012 - -
Tpr4g2400 1012 Pfam Leucine rich repeat 469 529 IPR001611 GO:0005515
Tpr4g2400 1012 Pfam Leucine rich repeat 149 207 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2400 Tpr-Chr4 25601564 25608629 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2400 30 1009 Receptor kinase-like Gene Family AT3G47570 42.727 0.0 764
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Tpr4g2400 Pkinase 3.7e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2400 - - mtr:MTR_1g029940 1263.83