Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2397 ATGAGGTCTTTTATGACGTTTCTTCTCTACTTTTGTTTCCAAATATTGGTGTATTGCATGCCATTTGCAACAGTTGCTCTTGCTTTGAGTACAGAGACTGATAAGCTTGCTTTGCTTGCATTGAAAGAAAAGCTTATAAATGGTGCACCAGATTCTCTTCCATCATGGAATGAGTCTCAACATTTCTGTGAATGGCAGGGTGTTACATGTGGTCGTCGTCATATGAGAGTCGTTGCCTTGCATTTGGAAAATCAAATATTGAGTGGTACTCTTGGACCATCCGTGGGAAATCTAACATTTCTGAGAATACTACGACTTAAAAATGTCAATTTGTATGGTGAAATTCCAAGTCAAATTGGTCGTTTAAAGCGATTGCAAGTTCTTAACTTAAACGATAACAATCTTCATGGCGAAATTCCTATGGAGCTCACAAATTGCACAGCTATCAAGGTAATTTTCTTGCACAGCAACCAACTCTCTGGAAGAATTCCGACATGGTTTGAGTCAATGATGCAACTTACTCAGTTGAATCTCGGTGCCAATAATCTCTTTGGAACTATTCCATCTTCCCTGGGAAATGTTTCATCACTCGAAAATTTATCACTTGCACAAAATCACTTGAAAGGAAGCATACCTTATTCTTTGGATAGGTTGTCAAATTTGAAAATACTGAATTTAGATTCAAATAATTTGTTAGGTGAAATCCCTAATTCTCTTTACAACCTATCAAATATTCAAGTTTTGGATATTGGGGGAAACAATCTTTTCGATAGTCTTCCATCAAATATGCATCTTGCTTTTCCCAATCTTAATGAATTCATTATTGGAGGCAACCAAATAAGCGGAACTTTTCCGTCTTCATTATCCAACCTCACTGAACTCCAAATGTTGGATATATCATACAATACTTTTGTTGGGTCAATACCTCATACTTTGGGTCAATTAAATAAACTTGAATGGTTTAATATCGGAGGTAATAATTTTGGTAGTGGAGGAGCTCATGATTTGGATTTTCTTTCATCGCTAACCAACTCTACTCAATTGTCAAAGATATATATTTTTGACAATGGATTTGGTGGTGTGTTGCCGAACATTATAGGAAACTTTTCCACCCATCTCAGTTTGCTTCATATGGAATATAATCAAATACATGGAGTGATACCAGAAAGAATTGGACAACTAATTGGTTTAACTGACTTAGAAATTGGAAACAATTTCCTAGAGGGAACAATTCCAGATTCAATAAGAAAGCTTAAGGATATAGGATCATTGGGCTTTGAAGATAACAAATTATCTGGTTACATCCCTATAGTCATTGGTAATCTTACTATGTTATCCCAACTAGATCTATCTGGAAACAAATTGGAAGGAAGCATTCCAATTTCATTAAGAAATTGCACCCAAATGCAGGAGTTAAGTTTCTCTAGTAACAAATTGAGTGGTCATATTCCGGATCAAACATTTGGCTATCTAGATGGTTTAATTTATCTTGGCTTGTCCAACAACTCCTTCACCGGCCCTATTCCTTCAGAGTTTGGTAACTTGAAACATATTTCGCAATTGTATCTAAGCTTAAATAAATTGTCTGGTGAAATTCCTAACGATTTAGCTTCTTGCATAGATTTGACACAACTTGTGTTGGGTGGAAACTTCTTCCATGGAACTATACCTTTGTTCTTGGGCTCCTCTTTAAGATCACTTGAAATCCTAGACCTTTCTAACAATAATTTCTCAAGCATAATCCCATTTGAACTAGAAAATCTAACATTTTTGAATAAGTTGGACTTATCATTTAACAATCTCTATGGTGAGGTTCCCATAGGAGGTGTCTTTAGCAATGTCACAAGAATTTCACTAACTGGAAATAAGAATCTTTGTGGAGGGATACCTCAATTGAAGCTTCCTAAATGTTTTAGGGCGCCTTCCAAGAAACACAAAAAATCTCTCAAAAAGAAACTTATCCTCATTAGTGTAATTGGTGGGATTTTGTTCTCTTTCATAGCTTTTATAACTGTCCATTTCCTTACGAGAAAAACCAAAAGGTTACCTTCTTCACCATCTTTGCAAAACGGGAACTTGAGGGTTACTTATGGTGAATTACATGAAGCAACCAATGGTTTTTCTTCATCTAACTTGGTAGGAGCAGGAAGCTTTGGATCTGTTTACAAAGGATCACTTCTCCACTTTGAAAGACCTATCGTTGTAAAGGTGTTGAATCTTCAAACACGTGGAGCAGCAAAGAGTTTCATGGCAGAATGCAAAGCTCTAGCAAATATGAAGCACCGGAATCTTGTCAAGGTCCTAACTTGTTGTTCAAGTGTTGATTATAATGGTGAAGACTTTAAAGCTATAGTTTTCGAGTTCATGCCTAATGGGAGTCTAGAAAAGTTATTGTATGATAGTGAAGAGTCTGGCAATCATTATCTCAGCTTCAAACAAAGGGTAGACATTGCTCTTGATGTAGCTCATGCACTTGATTATCTACACAATGATACAGAGCAAGCCGTAGTTCACTGTGATATTAAGCCAAGCAATGTTCTTCTTGATGATGACTTTATAGCCCACTTGGGAGACTTTGGCTTAGCAAGGCTCATTCATGGAGGGATAGGACATTCAACTAATGATCAAATTAGTTCCTCCACAATAATTAAGGGAACTATAGGATATGTTCCTCCTGAGTATGGAGCAGGTGGTCAAGTATCACTCCAGGGAGATATCTACAGCTACGGGATTCTTCTTTTAGAAATGCTCACCGGAAAGAGGCCGATAAATAACATGTTTAATGAGAATCTAAGCCTACACAAATTTTGCAAGATGAAAATTCCAGAAGGAATCCTTGAGATAGTAGATTCACATTTGCTTTTACCATTTGTTGAAGATCAAACAGGAATTGTTGAAAACAAAATCAAAAAGTGTTTGGTGATGTTTGCTGGAATTGGAGTTGCATGTTCAGAAGAGTTTCCTACTCATCGAATGCTGATAAAAGATGTTATAGTTAAGCTAAATGAGATCAAATCAAAGTTTCCATGTTAG 3033 0.3643 MRSFMTFLLYFCFQILVYCMPFATVALALSTETDKLALLALKEKLINGAPDSLPSWNESQHFCEWQGVTCGRRHMRVVALHLENQILSGTLGPSVGNLTFLRILRLKNVNLYGEIPSQIGRLKRLQVLNLNDNNLHGEIPMELTNCTAIKVIFLHSNQLSGRIPTWFESMMQLTQLNLGANNLFGTIPSSLGNVSSLENLSLAQNHLKGSIPYSLDRLSNLKILNLDSNNLLGEIPNSLYNLSNIQVLDIGGNNLFDSLPSNMHLAFPNLNEFIIGGNQISGTFPSSLSNLTELQMLDISYNTFVGSIPHTLGQLNKLEWFNIGGNNFGSGGAHDLDFLSSLTNSTQLSKIYIFDNGFGGVLPNIIGNFSTHLSLLHMEYNQIHGVIPERIGQLIGLTDLEIGNNFLEGTIPDSIRKLKDIGSLGFEDNKLSGYIPIVIGNLTMLSQLDLSGNKLEGSIPISLRNCTQMQELSFSSNKLSGHIPDQTFGYLDGLIYLGLSNNSFTGPIPSEFGNLKHISQLYLSLNKLSGEIPNDLASCIDLTQLVLGGNFFHGTIPLFLGSSLRSLEILDLSNNNFSSIIPFELENLTFLNKLDLSFNNLYGEVPIGGVFSNVTRISLTGNKNLCGGIPQLKLPKCFRAPSKKHKKSLKKKLILISVIGGILFSFIAFITVHFLTRKTKRLPSSPSLQNGNLRVTYGELHEATNGFSSSNLVGAGSFGSVYKGSLLHFERPIVVKVLNLQTRGAAKSFMAECKALANMKHRNLVKVLTCCSSVDYNGEDFKAIVFEFMPNGSLEKLLYDSEESGNHYLSFKQRVDIALDVAHALDYLHNDTEQAVVHCDIKPSNVLLDDDFIAHLGDFGLARLIHGGIGHSTNDQISSSTIIKGTIGYVPPEYGAGGQVSLQGDIYSYGILLLEMLTGKRPINNMFNENLSLHKFCKMKIPEGILEIVDSHLLLPFVEDQTGIVENKIKKCLVMFAGIGVACSEEFPTHRMLIKDVIVKLNEIKSKFPC* 1011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2397 1010 Pfam Leucine rich repeat 468 528 IPR001611 GO:0005515
Tpr4g2397 1010 Pfam Leucine rich repeat 268 328 IPR001611 GO:0005515
Tpr4g2397 1010 SUPERFAMILY Protein kinase-like (PK-like) 681 997 IPR011009 -
Tpr4g2397 1010 SMART LRR_typ_2 442 466 IPR003591 -
Tpr4g2397 1010 SMART LRR_typ_2 218 242 IPR003591 -
Tpr4g2397 1010 SMART LRR_typ_2 291 315 IPR003591 -
Tpr4g2397 1010 SMART LRR_typ_2 588 613 IPR003591 -
Tpr4g2397 1010 SMART LRR_typ_2 564 587 IPR003591 -
Tpr4g2397 1010 SMART LRR_typ_2 515 539 IPR003591 -
Tpr4g2397 1010 SMART LRR_typ_2 122 146 IPR003591 -
Tpr4g2397 1010 PANTHER LRR RECEPTOR-LIKE KINASE 29 1010 - -
Tpr4g2397 1010 SMART serkin_6 707 993 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g2397 1010 Pfam Leucine Rich Repeat 220 242 IPR001611 GO:0005515
Tpr4g2397 1010 ProSitePatterns Protein kinases ATP-binding region signature. 713 736 IPR017441 GO:0005524
Tpr4g2397 1010 ProSiteProfiles Protein kinase domain profile. 707 993 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g2397 1010 SUPERFAMILY L domain-like 346 627 - -
Tpr4g2397 1010 Gene3D Transferase(Phosphotransferase) domain 1 789 1008 - -
Tpr4g2397 1010 SUPERFAMILY L domain-like 32 328 - -
Tpr4g2397 1010 Gene3D Ribonuclease Inhibitor 199 332 IPR032675 -
Tpr4g2397 1010 Gene3D Ribonuclease Inhibitor 333 646 IPR032675 -
Tpr4g2397 1010 Gene3D Phosphorylase Kinase; domain 1 670 788 - -
Tpr4g2397 1010 PRINTS Leucine-rich repeat signature 445 458 - -
Tpr4g2397 1010 PRINTS Leucine-rich repeat signature 564 577 - -
Tpr4g2397 1010 Gene3D Ribonuclease Inhibitor 30 190 IPR032675 -
Tpr4g2397 1010 ProSitePatterns Serine/Threonine protein kinases active-site signature. 836 848 IPR008271 GO:0004672|GO:0006468
Tpr4g2397 1010 ProSiteProfiles Leucine-rich repeat profile. 566 587 IPR001611 GO:0005515
Tpr4g2397 1010 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 29 1010 - -
Tpr4g2397 1010 Pfam Leucine rich repeat N-terminal domain 33 70 IPR013210 -
Tpr4g2397 1010 Pfam Protein kinase domain 709 947 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2397 Tpr-Chr4 25556460 25560092 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2397 28 1008 Receptor kinase-like Gene Family AT3G47570 44.109 0.0 771
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Tpr4g2397 Pkinase 9.9e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2397 - - mtr:MTR_1g029940 1380.16