Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2396 ATGAGGACATATATCATGTTTCTTCTCTATTTTGCTACGTTGTCAACAACAGTTGCTCTTGCTTTGAGTTTGAGTTCAGTGACTGACAAACATGCTTTGCTTTCTTTGAAAGTAAAGCTTACTAATGGTGAACCTGATTATCTTCCATCATGGAATGAATCTCTTCATTTTTGTGAATGGGAGGGTGTTACATGTGGTCGACGCCACATGAGAGTCTTTGTCTTGCAGTTGGAAAATCAAAATTTGGGCGGTACTCTTGAACCGGCCTTGGGAAATTTAACATTTCTCAAAAAACTCAAACTTTCCAACATCAATTTGCATGGTGAAATTCCAAGAGAAGTTGGTCGTTTGAAAAGGTTGCAAGTTCTTGACTTGAGCAAGAACAAGTTTCATGGTAAGATTCCTATTGAACTAAGCAATTGTACCAATATTAAGGAAATTATCTTGTTGTACAATCAGCTCACTGGACATATTCCATCATGGTTTGGTTCTATGATGCAGCTTAATAAGTTGCTTCTTGGAGCAAATAATTTAGTGGGTACTATTCCACCTTCTCTAGGAAATATTTCATCACTCCAAAACATAACACTTGCAAGAAATCAATTGGAAGGAAGCATACCTCGTGTCTTGGGTAAGTTGTCAAATTTGAAAGACCTAAATTTGGGTTCAAATAACTTTTCTGGAGAAATTCCTTATTCTCTTTACAATCTGTCAAATATTCAAGTTTTTGTCCTTGGAGAAAACCAGTTTTCCGGTTATCTTCCATCAAATATACATGTTGCTTTCCCCAGCCTTCGAGCCTTCTTGGTCGGAGGGAACCACTTTGTCGGAACTTTTCCATGTTCAATATCCAACCTCACTAAATTGCGATGGTTTGATATATCATGGAATGGTTTTAATGGGCTAATACCTCCAACTTTGGGATCCTTAAGCAAACTTCACAGGTTTCACATTGGAAATAATAATTTTGGGAATGGAGGAGCTCCCGATTTGGATTTCCTTTACTCGCTAACCAATTGTACAGTATTGCAAGAACTAATGTTGGATGACAATAGATTTGGTGGCGTATTGCAAGAGCGTATAGGCAACTTTTCCAACCATCTCACTTTTCTTAGTATGGCAAGTAACCAAATATCTGGAAGAATACCAGAAGGAATTGGACAACTGATAGGTCTAACAGGTTTTATCATGAGCAAAAATTTCCTTGAGGGAACAATTCCATATTCTATTGGAATGTTGAAGAATATAGTAGTATTGGTCTTACAAGAAAATAATTTATTTGGTAACATCCCTATTGTAATTGGCAATCTTACTGTGTTGTCTGATCTTTACTTGCATTCCAATGAATTAGAAGGAAGCATTCCATTTACTCTTAGATATTGCACAAAGTTGCAATCATTTGGTGCTTCTGACAACAACTTGAGTGGCAATATACCTAATCAAACATTTTCCTATCTAAAAGATTTAATAAATCTTGACTTGTCCAATAACTCGTTAACCGGTCTCATTCCTTCAGATTTTGGTAACTTGAAGCAATTTTCCGTATTGTATCTGTATGCAAACAAGTTGTCAGGTGAAATTCCTGATGCACTTGCTGCTTGTTTGACACTAACAGAGCTTGTGTTGCAGAGAAACTTTTTTCATGGAAGTATACCTTCCTTTTTGGCCTCCTCATTAAGATCACTTGAAATCCTAGACCTTTCTAGCAATAATTTCTCAAGCATAATCCCATTTGAACTAGAAAATCTAACATATTTGTATAAGTTGAACTTATCATTTAACAATCTCTATGGTGAGGTTCCCTTAGGAGGTGTCTTTAGCAATGTCACAACAATTTCACTAACTGGAAATAAGAATCTTTGTGGAGGGATACCTCAATTGAAGCTTCCTAAATGTTTTAGGGCGCCTTCCAAGAAACACAAAAAATCTCTCAAAAAGAAACTTATCCTCATTAGTGTAATTGGTGGGATTTTGTTCTCTTTCATAGCTTTTATAACTGTCCATTTCCTTACGAGAAAAACCAAAAGGTTACCTTCTTCACCATCTTTGCAAAACGGGAACTTGAGGGTTACTTATGGTGAATTACATGAAGCAACCAATGGTTTTTCTTCATCTAACTTGGTAGGAGCAGGAAGCTTTGGATCTGTTTACAAAGGATCACTTCTCCACTTTGAAAGACCTATCGTTGTAAAGGTGTTGAATCTTCAAACACGTGGAGCAGCAAAGAGTTTCATGGCAGAATGCAAAGCTCTAGCAAATATGAAGCACCGGAATCTTGTCAAGGTCCTAACTTGTTGTTCAAGTGTTGATTATAATGGTGAAGACTTTAAAGCTATAGTTTTCGAGTTCATGCCTAATGGGAGTCTAGAAAAGTTATTGTATGATAGTGAAGGGTCTGGCAATCATAATCTCAGCTTCAAACAAAGGGTAGACATTGCTATTGATGTAGCTCATGCACTTGATTATCTACACGATGATACAGAGCAAGCCGTAGTTCACTGTGATATTAAGCCAAGCAATGTTCTTCTTGATGATGACTTTGTAGCCCACTTGGGAGACTTTGGCTTAGCAAGGCTCATTCATGGAGGGATAGGACATTCAAATAATGATCAAGTTAGTTCCTCCACAATAATTAAGGGAACTATAGGATATGTTCCTCCTGAGTATGGAGCAGGTGGTCCAGTATCACCAGAGGGAGATATCTACAGTTATGGGATTCTGTTGTTGGAAATGCTCACTGGAAAGAAGCCAACAAATAACATGTTTTATGAGAATCTAAGTCTACATAAATTTTGTAAGATGAAAATTTCAGAAGACATTCTTGACATAGTGGATTCATGTTTGCTTATTCCATTTGCCGAAGATCAGACACGGGTTGTCGAAAACAATATTAAACAGTGTCTAATGATGTTTGCTGAAACTGGAGTTGCATGTTCTGAAGAATTTCCTTCTCAAAGAATGCTCATAAAAGATGTTATATTGAAGTTGCTTGCAATTAAACAGAAGTTGTCTTGCTAA 3018 0.3688 MRTYIMFLLYFATLSTTVALALSLSSVTDKHALLSLKVKLTNGEPDYLPSWNESLHFCEWEGVTCGRRHMRVFVLQLENQNLGGTLEPALGNLTFLKKLKLSNINLHGEIPREVGRLKRLQVLDLSKNKFHGKIPIELSNCTNIKEIILLYNQLTGHIPSWFGSMMQLNKLLLGANNLVGTIPPSLGNISSLQNITLARNQLEGSIPRVLGKLSNLKDLNLGSNNFSGEIPYSLYNLSNIQVFVLGENQFSGYLPSNIHVAFPSLRAFLVGGNHFVGTFPCSISNLTKLRWFDISWNGFNGLIPPTLGSLSKLHRFHIGNNNFGNGGAPDLDFLYSLTNCTVLQELMLDDNRFGGVLQERIGNFSNHLTFLSMASNQISGRIPEGIGQLIGLTGFIMSKNFLEGTIPYSIGMLKNIVVLVLQENNLFGNIPIVIGNLTVLSDLYLHSNELEGSIPFTLRYCTKLQSFGASDNNLSGNIPNQTFSYLKDLINLDLSNNSLTGLIPSDFGNLKQFSVLYLYANKLSGEIPDALAACLTLTELVLQRNFFHGSIPSFLASSLRSLEILDLSSNNFSSIIPFELENLTYLYKLNLSFNNLYGEVPLGGVFSNVTTISLTGNKNLCGGIPQLKLPKCFRAPSKKHKKSLKKKLILISVIGGILFSFIAFITVHFLTRKTKRLPSSPSLQNGNLRVTYGELHEATNGFSSSNLVGAGSFGSVYKGSLLHFERPIVVKVLNLQTRGAAKSFMAECKALANMKHRNLVKVLTCCSSVDYNGEDFKAIVFEFMPNGSLEKLLYDSEGSGNHNLSFKQRVDIAIDVAHALDYLHDDTEQAVVHCDIKPSNVLLDDDFVAHLGDFGLARLIHGGIGHSNNDQVSSSTIIKGTIGYVPPEYGAGGPVSPEGDIYSYGILLLEMLTGKKPTNNMFYENLSLHKFCKMKISEDILDIVDSCLLIPFAEDQTRVVENNIKQCLMMFAETGVACSEEFPSQRMLIKDVILKLLAIKQKLSC* 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2396 1005 Gene3D Transferase(Phosphotransferase) domain 1 784 1004 - -
Tpr4g2396 1005 Gene3D Ribonuclease Inhibitor 328 641 IPR032675 -
Tpr4g2396 1005 SUPERFAMILY Protein kinase-like (PK-like) 676 949 IPR011009 -
Tpr4g2396 1005 ProSitePatterns Serine/Threonine protein kinases active-site signature. 831 843 IPR008271 GO:0004672|GO:0006468
Tpr4g2396 1005 SUPERFAMILY L domain-like 366 622 - -
Tpr4g2396 1005 ProSiteProfiles Protein kinase domain profile. 702 972 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g2396 1005 Gene3D Ribonuclease Inhibitor 185 326 IPR032675 -
Tpr4g2396 1005 Pfam Leucine rich repeat 536 596 IPR001611 GO:0005515
Tpr4g2396 1005 Pfam Leucine rich repeat 471 523 IPR001611 GO:0005515
Tpr4g2396 1005 Gene3D Ribonuclease Inhibitor 26 184 IPR032675 -
Tpr4g2396 1005 PRINTS Leucine-rich repeat signature 489 502 - -
Tpr4g2396 1005 PRINTS Leucine-rich repeat signature 559 572 - -
Tpr4g2396 1005 Pfam Protein kinase domain 704 967 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g2396 1005 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 27 1005 - -
Tpr4g2396 1005 SMART serkin_6 702 960 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g2396 1005 SMART LRR_typ_2 559 582 IPR003591 -
Tpr4g2396 1005 SMART LRR_typ_2 286 310 IPR003591 -
Tpr4g2396 1005 SMART LRR_typ_2 213 237 IPR003591 -
Tpr4g2396 1005 SMART LRR_typ_2 583 608 IPR003591 -
Tpr4g2396 1005 SMART LRR_typ_2 486 509 IPR003591 -
Tpr4g2396 1005 SMART LRR_typ_2 117 141 IPR003591 -
Tpr4g2396 1005 Gene3D Phosphorylase Kinase; domain 1 665 783 - -
Tpr4g2396 1005 Pfam Leucine rich repeat N-terminal domain 28 65 IPR013210 -
Tpr4g2396 1005 ProSiteProfiles Leucine-rich repeat profile. 561 582 IPR001611 GO:0005515
Tpr4g2396 1005 SUPERFAMILY L domain-like 31 323 - -
Tpr4g2396 1005 ProSitePatterns Protein kinases ATP-binding region signature. 708 731 IPR017441 GO:0005524
Tpr4g2396 1005 PANTHER LRR RECEPTOR-LIKE KINASE 27 1005 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2396 Tpr-Chr4 25551339 25555107 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2396 28 1002 Receptor kinase-like Gene Family AT3G47570 44.276 0.0 780
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Tpr4g2396 Pkinase 2.5e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2396 - - gmx:100777490 1293.49