Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2393 ATGGAACTCACAAATTGCACAGCTATCAAGGTAATTTTCTTGCACAGCAACCGACTCTCTGGAAGAATTCCGACATGGTTTGAGTCAATGATGCAACTTACTCAGTTGAATCTCGGTGCCAATAATCTCTTTGGTACTATTCCATCTTCCCTGGGAAATGTTTCATCACTCGAAAATTTATCACTTGCACAAAATCACTTGAAAGGAAGCATACCTTATTCTTTGGGTAGGTTGTCAAATTTGAAAATACTGAATCTAGATTCAAATAATTTGTCAGGTGAAATCCCTAATTCTCTTTACAACCTATCAAATATTCAAGTTTTGGATATTGGGGGAAACAATCTTTTCGGTAGTCTTCCATCAAATATGCATCTTGCTTTTCCCAATCTTAATGAATTCATTATTGGAGGCAACCAAATAAGCGGAACTTTTCCGTCTTCATTATCCAACCTCACTGAACTCCAAATGTTGGATATATCATATAATGCTTCTTTTGGGTCAATACCTAATACTTTGGGTCAATTAAATAAACTTGAATGGTTTAATATCGGAGGTAATAATTTTGGGAGTGGAGGAGCTCATGATTTGGATTTTCTTTCATCGCTAACCAACTCTACTCAATTGTCAAAGATATATATTTTTGACAATGGATTTGGTGGTGTGTTGCCGAACATTATAGGAAACTTTTCCACCCATCTCCGTTTGATTCATATGGAATATAATCAAATACATGGAGTGATACCAGAAAGAATTGGACAACTAATTGGTTTAACTGACTTAGAAATTGGATACAATTTCCTAGAGGGAACAATTTCAGATTCAATAAGAAAGCTTAAGGATATAGGATCATTGGGCTTTGAAGATAACAAATTATCTGGTAACATCCCTATAGTCATTGGTAATCTTACTATGTTATCCCAACTAGATCTATCTGGAAACAAATTGGAAGGAAGCATTCCAATTTCATTAAGAAATTGCACCCAAATGCAGGAGTTAAGTTTCTCTAGTAACAAATTGAGTGGTCATATTCCCGATCAAACATTTGGCTATCTAGATGGTTTAATTTATCTTGGCTTGTCCAACAACTCCTTCACCGGCCCTATTCCTTCAGATTTTGGTAACTTGAAACATATTTCGCAATTGTATCTAAGCTTAAATAAATTGTCTGGTGAAATTCCTAACGATTTAGCTTCTTGCATAGATTTGACACAACTTGTGTTGGGTGGAAACTTCTTCCATGGAACTATACCTTTGTTCTTGGGCTCCTCTTTAAGATCACTTGAAATCCTAGACCTTTCTAGCAATAATTTCTCAAGCATAATCCCATTTGAACTAGAAAATCTTACATTTTTTAATAAGTTGGACTTATCATTTAACAATCTCTATGGTGAGGTTCCAATAGGAGGTGTCTTTAGCAATGTCACAACAATTTCACTAACTGGAAATAAGAATCTTTGTGGAGGGATACCTCAATTGAAGCTTCCTAAATGTTTTAGGGCGCCTTCCAAGAAACACAAAAAATCTCTCAAAAAGAAACTTATCCTCATTAGTGTAATTGGTGGGATTTTGTTCTCTTTCATAGCTTTTATAACTGTCCATTTCCTTACCAGAAAAACCAAAAGGTTACCTTCTTCACCATCTTTGCAAAACGGGAACTTGAGGGTTACTTATGGTGAATTACATGAAGCAACCAATGGTTTTTCTTCATCTAACTTGGTAGGAGCAGGAAGCTTTGGATCTGTTTACAAAGGATCACTTCTCCACTTTGAAAGACCTATCGTTGTAAAGGTGTTGAATCTTCAAACACGTGGAGCAGCAAAGAGTTTCATGGCAGAATGCAAAGCTCTAGCAAATATGAAGCACCGGAATCTTGTCAAGGTCCTAACTTGTTCAAGTGTTGATTATAATGGTGAAGACTTTAAAGCTATAGTTTTCGAGTTCATGCCTAATGGGAGTCTAGAAAAGTTATTGTATGATAGTGAAGAGTCTGGCAATCAAAATCTCAGCTTCAAACAAAGGGTAGACATTGCCATTGATGTAGCTCATGCACTTGATTATCTACACAATGATACAGAGCAAGCCGTAGTTCACTGTGATATTAAGCCAAGCAATGTTCTTCTTGATGATGACTTTGTAGCCCACTTGGGAGACTTTGGCTTAGCAAGGCTCATTCATGGAGGGATAGGACATTCAAGTAATGATCAAGTTAGTTCCTCCACAATAATTAAGGGAACTATAGGATATGTTCCTCCTGAGTATGGAGCAGGTGGTCAAGTATCACTCCAGGGAGATATCTACAGCTACGGGATTCTTCTTTTAGAAATGCTCACCCGAAAGAGGCCGACAAATAACATGTTTAATGAGAATCTAAGCCTACACAAATTTTGCAAGATGAAAATTCCAGAAGGAATCATTGAGATAGTAGATTCACATTTGCTTTTGCCATTTGTTGAAGATCAAACAGGAATTGTTAAAAACAAAATCAATAAGTGTTTGGTGATGTTTGCTGGAATTGGAGTTGCATGTTCAGAAGAGTTTCCTGCTCATCGAATGCTGATAAAAGATGTCATAGTTAAGCTAAATGAAATCAAATCAAAGTTTCCATGTTAG 2610 0.3636 MELTNCTAIKVIFLHSNRLSGRIPTWFESMMQLTQLNLGANNLFGTIPSSLGNVSSLENLSLAQNHLKGSIPYSLGRLSNLKILNLDSNNLSGEIPNSLYNLSNIQVLDIGGNNLFGSLPSNMHLAFPNLNEFIIGGNQISGTFPSSLSNLTELQMLDISYNASFGSIPNTLGQLNKLEWFNIGGNNFGSGGAHDLDFLSSLTNSTQLSKIYIFDNGFGGVLPNIIGNFSTHLRLIHMEYNQIHGVIPERIGQLIGLTDLEIGYNFLEGTISDSIRKLKDIGSLGFEDNKLSGNIPIVIGNLTMLSQLDLSGNKLEGSIPISLRNCTQMQELSFSSNKLSGHIPDQTFGYLDGLIYLGLSNNSFTGPIPSDFGNLKHISQLYLSLNKLSGEIPNDLASCIDLTQLVLGGNFFHGTIPLFLGSSLRSLEILDLSSNNFSSIIPFELENLTFFNKLDLSFNNLYGEVPIGGVFSNVTTISLTGNKNLCGGIPQLKLPKCFRAPSKKHKKSLKKKLILISVIGGILFSFIAFITVHFLTRKTKRLPSSPSLQNGNLRVTYGELHEATNGFSSSNLVGAGSFGSVYKGSLLHFERPIVVKVLNLQTRGAAKSFMAECKALANMKHRNLVKVLTCSSVDYNGEDFKAIVFEFMPNGSLEKLLYDSEESGNQNLSFKQRVDIAIDVAHALDYLHNDTEQAVVHCDIKPSNVLLDDDFVAHLGDFGLARLIHGGIGHSSNDQVSSSTIIKGTIGYVPPEYGAGGQVSLQGDIYSYGILLLEMLTRKRPTNNMFNENLSLHKFCKMKIPEGIIEIVDSHLLLPFVEDQTGIVKNKINKCLVMFAGIGVACSEEFPAHRMLIKDVIVKLNEIKSKFPC* 870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2393 869 ProSitePatterns Serine/Threonine protein kinases active-site signature. 695 707 IPR008271 GO:0004672|GO:0006468
Tpr4g2393 869 SUPERFAMILY Protein kinase-like (PK-like) 541 856 IPR011009 -
Tpr4g2393 869 SUPERFAMILY RNI-like 4 267 - -
Tpr4g2393 869 PRINTS Leucine-rich repeat signature 305 318 - -
Tpr4g2393 869 PRINTS Leucine-rich repeat signature 424 437 - -
Tpr4g2393 869 ProSitePatterns Protein kinases ATP-binding region signature. 573 596 IPR017441 GO:0005524
Tpr4g2393 869 Pfam Protein kinase domain 569 799 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g2393 869 ProSiteProfiles Protein kinase domain profile. 567 852 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g2393 869 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 1 869 - -
Tpr4g2393 869 SMART serkin_6 567 852 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g2393 869 Pfam Leucine rich repeat 56 115 IPR001611 GO:0005515
Tpr4g2393 869 Pfam Leucine rich repeat 128 188 IPR001611 GO:0005515
Tpr4g2393 869 Pfam Leucine rich repeat 328 388 IPR001611 GO:0005515
Tpr4g2393 869 SUPERFAMILY L domain-like 206 487 - -
Tpr4g2393 869 Gene3D Ribonuclease Inhibitor 1 193 IPR032675 -
Tpr4g2393 869 SMART LRR_typ_2 151 175 IPR003591 -
Tpr4g2393 869 SMART LRR_typ_2 375 399 IPR003591 -
Tpr4g2393 869 SMART LRR_typ_2 78 102 IPR003591 -
Tpr4g2393 869 SMART LRR_typ_2 424 447 IPR003591 -
Tpr4g2393 869 SMART LRR_typ_2 302 326 IPR003591 -
Tpr4g2393 869 Gene3D Transferase(Phosphotransferase) domain 1 648 867 - -
Tpr4g2393 869 PANTHER LRR RECEPTOR-LIKE KINASE 1 869 - -
Tpr4g2393 869 Gene3D Ribonuclease Inhibitor 194 506 IPR032675 -
Tpr4g2393 869 ProSiteProfiles Leucine-rich repeat profile. 426 447 IPR001611 GO:0005515
Tpr4g2393 869 Gene3D Phosphorylase Kinase; domain 1 530 647 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2393 Tpr-Chr4 25479150 25482266 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2393 3 867 Receptor kinase-like Gene Family AT3G47570 44.369 0.0 681
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Tpr4g2393 Pkinase 1.5e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2393 - - mtr:MTR_1g029940 1273.46