Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2392 ATGAGGACATATATCATGTTTCTTCTCTATTTTGCTACGTTGTCAACAACAGTTGCTCTTGCTTTGAGTTTGAGTTCAGTGACTGACAAACATGCTTTGCTTTCTTTGAAAGTAAAGCTTACTAATGGTGAACCTGATTATCTTCCATCATGGAATGAATCTCTTCATTTTTGTGAATGGGAGGGTGTTACATGTGGTCGACGCCACATGAGAGTCTTTGTCTTGCAGTTGGAAAATCAAAATTTGGGCGGTACTCTTGAACCGGCCTTGGGAAATTTAACATTTCTCAAAAAACTCAAACTTTCCAACATCAATTTGCATGGTGAAATTCCAAGAGAAGTTGGTCGTTTGAAAAGGTTGCAAGTTCTTGACTTGAGCAAGAACAAGTTTCATGGTAAGATTCCTATTGAGCTAAGCAATTGTACCAATATTAAGGAAATTATCTTGTTGTACAATCAGCTCACTGGACATATTCCATCATGGTTTGGTTCTATGATGCAGCTTAATAAGTTGCTTCTTGGAGCAAATAATTTAGTGGGTACTATTCCACCTTCTCTAGGAAATATTTCATCACTCCAAAACATAACAGTTGCAAGAAATCAATTGGAAGGAAGCATACCTCGTGTCTTGGGTAAGTTGTCAAATTTGAAAGAGCTAAATTTGGGTTCAAATAACTTTTCTGGAGAAATTCCTTATTCTCTTTACAATCTGTCAAATATTCAAGTTTTTGTCCTTGGAGAAAACCAGTTTTTCGGTTATCTTCCATCAAATATACATGTTGCTTTCCCCAGCCTTCGAGCCTTCTTGGTCGGAGGGAACCACTTTGTCGGAACTTTTCCATGTTCAATATCCAACCTCACTAAATTGCGATGGTTTGATATATCATGGAATGGTTTTAATGGGCTAATACCTCCAACTTTGGGATCCTTAAGCAAACTTCACAGGTTTCACATTGGAAATAATAATTTTGGGAATGGAGGAGCTCCCGATTTGGATTTCCTTTACTCGCTAACCAATTGTACAGTATTGCAAGAACTAATGTTGGATGACAATAGATTTGGTGGCGTATTGCAAGAGCGTATAGGCAATTTTTCCAACCATCTCACTTGGCTTAGTATGGCAAGTAACCAAATATCTGGAAGAATACCAGAAGGAATTGGACAACTGATAGGTCTAACAGGTTTTAACATGAAGAAAAATTTCCTTGAGGGAACAATTCCATATTCTATTGGAATGTTGAAGAATATAGTAATATTGGTCTTACAAGAAAACAATTTATTTGGTAACATCCCTATTGTAATTGGCAATCTTACTGTGTTGTCTGAGCTTTACTTGCATACCAATGAATTAGAAGGAAGCATTCCATTTACTCTTAGATATTGCACAAAGTTGCAATCATTTGGTGCTTCTGACAACAACTTGAGTGGCAATATACCTAATCAAACATTTGCCTATCTAAAAGATTTAATAAATCTTGACTTGTCCAATAACTCGTTAACCGGTCTCATTCCTTCAGATTTTGGTAACTTGAAGCAACTTTCCATATTGTATCTGTATGCAAATAAGTTGTCAGGTGAAATTCCTGATGCACTTGCTGCTTGTTTGACACTAACAGAGCTTGTGTTGCAGAGAAACTTTTTTCATGGAAGTATACCTTCCTTTTTGGGCTCCTCATTAAGATCCCTCCAAATCCTAGACCTTTCTAGCAATAACTTCTCAAGCATAATCCCTCGTGAACTAAAAGATTTGACATCATTGAGTATATTGAACTTGTCTTTTAACAATCTCTATGGTGAAGTTCCTGTTGGAGGGATTTTTAATAACATCACAACAATTTCACTCGTTGGAAATAAAGATCTTTGTGGGGGAATACCTCAACTGAAACTCACTGCATGCTCAAGATCACCTTCAAAGAGACACAAAGGGTCTTTTAAAGTTATCTTCATCATTATAATTGGCGGGGTTTTAATCTCTTTTATAGTGTTTATCACTATATGTTATCTAAGGAAAAAGACAAGAAAGTTACTTTCTTCCCCATCTCTGCAAAATAGCCACTTGGGGATTTCTTATCGAGAGCTACATGAAGCAACCAACGGATTTTCTTCATCAAATTTGATAGGCACGGGAAACTTTGGTTCTGTATACAAAGGATCCCTTATCCAGTTTGAAGGACCTATTGCGGTAAAGGTGTTGAAACTTGAAACACATGGGGCATCTAAGAGTTTTTTGGCTGAATGTAAAGTTCTTGAAAAGGTTAAACATCAAAATCTTCTCAAGCTCTTGACATTTTGTTCAAGTGTTGATTATAATGGTGAAGTTTTCAAGGCTATAGTTTATGAGTTTATGCCTATGGGGAGTTTAGAATATGTGATGCACAACGATAAACAACTCGAATTGAGAAATCCAAATATCAACTTTACGCAAAGTGTAAGTGTTGCCCTGGATGTAGCTCACGCATTGGATTATCTTCACAATAGTTTTGAGCAAGTTGTCGTTCATTGTGATATTAAGCCAAGCAATGTTCTACTTGATGATGAAATGGTTGCCTACTTAGGAGATTTTGGGTTAGCTAGGTTCCTTCATGATGCGACGATGATTTCAAGTAATGATCATGGTAGCTCCTATGCAGTTAAGGGAACCATTGGATATGTTCCCCCAGAGTATGGATTAGGTGGCCAACTATCACCACAAGGAGATGTCTTCAGCTATGGAATCCTTTTGTTGGAGATGCTAACCGGAAAAAGACCAACTGATTGCATGTTTGGTGAGGGTCTAAGCCTACACGAATTCTGTAAGAAGGCAATTCCAGACAAAATCACAGAGATAGTGGATTCACGGTTGCTTGTGCCATATGTCGGCGAACAGACAGAGGTTATTGAAGGCAACTATCGCAAAAGTTTGGTGTCCTTTGCTAAGATTGGAGTAGCATGTTCAGTAGAATTCTCCGCTCAGCGAATGAACATAAAAGATGCTATAACAGAATTGCATGCAATTAAACAGAATTTGGCACTCTGA 3015 0.3751 MRTYIMFLLYFATLSTTVALALSLSSVTDKHALLSLKVKLTNGEPDYLPSWNESLHFCEWEGVTCGRRHMRVFVLQLENQNLGGTLEPALGNLTFLKKLKLSNINLHGEIPREVGRLKRLQVLDLSKNKFHGKIPIELSNCTNIKEIILLYNQLTGHIPSWFGSMMQLNKLLLGANNLVGTIPPSLGNISSLQNITVARNQLEGSIPRVLGKLSNLKELNLGSNNFSGEIPYSLYNLSNIQVFVLGENQFFGYLPSNIHVAFPSLRAFLVGGNHFVGTFPCSISNLTKLRWFDISWNGFNGLIPPTLGSLSKLHRFHIGNNNFGNGGAPDLDFLYSLTNCTVLQELMLDDNRFGGVLQERIGNFSNHLTWLSMASNQISGRIPEGIGQLIGLTGFNMKKNFLEGTIPYSIGMLKNIVILVLQENNLFGNIPIVIGNLTVLSELYLHTNELEGSIPFTLRYCTKLQSFGASDNNLSGNIPNQTFAYLKDLINLDLSNNSLTGLIPSDFGNLKQLSILYLYANKLSGEIPDALAACLTLTELVLQRNFFHGSIPSFLGSSLRSLQILDLSSNNFSSIIPRELKDLTSLSILNLSFNNLYGEVPVGGIFNNITTISLVGNKDLCGGIPQLKLTACSRSPSKRHKGSFKVIFIIIIGGVLISFIVFITICYLRKKTRKLLSSPSLQNSHLGISYRELHEATNGFSSSNLIGTGNFGSVYKGSLIQFEGPIAVKVLKLETHGASKSFLAECKVLEKVKHQNLLKLLTFCSSVDYNGEVFKAIVYEFMPMGSLEYVMHNDKQLELRNPNINFTQSVSVALDVAHALDYLHNSFEQVVVHCDIKPSNVLLDDEMVAYLGDFGLARFLHDATMISSNDHGSSYAVKGTIGYVPPEYGLGGQLSPQGDVFSYGILLLEMLTGKRPTDCMFGEGLSLHEFCKKAIPDKITEIVDSRLLVPYVGEQTEVIEGNYRKSLVSFAKIGVACSVEFSAQRMNIKDAITELHAIKQNLAL* 1005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2392 1004 PRINTS Leucine-rich repeat signature 489 502 - -
Tpr4g2392 1004 PRINTS Leucine-rich repeat signature 583 596 - -
Tpr4g2392 1004 SUPERFAMILY L domain-like 366 622 - -
Tpr4g2392 1004 ProSitePatterns Protein kinases ATP-binding region signature. 706 729 IPR017441 GO:0005524
Tpr4g2392 1004 ProSitePatterns Serine/Threonine protein kinases active-site signature. 831 843 IPR008271 GO:0004672|GO:0006468
Tpr4g2392 1004 Gene3D Transferase(Phosphotransferase) domain 1 782 1003 - -
Tpr4g2392 1004 Pfam Leucine rich repeat N-terminal domain 28 65 IPR013210 -
Tpr4g2392 1004 SUPERFAMILY L domain-like 31 323 - -
Tpr4g2392 1004 SMART serkin_6 700 999 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g2392 1004 Pfam Leucine rich repeat 472 523 IPR001611 GO:0005515
Tpr4g2392 1004 Pfam Leucine rich repeat 536 596 IPR001611 GO:0005515
Tpr4g2392 1004 ProSiteProfiles Protein kinase domain profile. 700 1004 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g2392 1004 SUPERFAMILY Protein kinase-like (PK-like) 674 994 IPR011009 -
Tpr4g2392 1004 PANTHER LRR RECEPTOR-LIKE KINASE 27 1003 - -
Tpr4g2392 1004 Pfam Protein kinase domain 702 918 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g2392 1004 Gene3D Ribonuclease Inhibitor 331 641 IPR032675 -
Tpr4g2392 1004 Gene3D Ribonuclease Inhibitor 185 326 IPR032675 -
Tpr4g2392 1004 ProSiteProfiles Leucine-rich repeat profile. 561 582 IPR001611 GO:0005515
Tpr4g2392 1004 SMART LRR_typ_2 583 608 IPR003591 -
Tpr4g2392 1004 SMART LRR_typ_2 510 534 IPR003591 -
Tpr4g2392 1004 SMART LRR_typ_2 437 461 IPR003591 -
Tpr4g2392 1004 SMART LRR_typ_2 286 310 IPR003591 -
Tpr4g2392 1004 SMART LRR_typ_2 213 237 IPR003591 -
Tpr4g2392 1004 SMART LRR_typ_2 117 141 IPR003591 -
Tpr4g2392 1004 SMART LRR_typ_2 559 582 IPR003591 -
Tpr4g2392 1004 SMART LRR_typ_2 486 509 IPR003591 -
Tpr4g2392 1004 Gene3D Phosphorylase Kinase; domain 1 663 781 - -
Tpr4g2392 1004 Pfam Leucine Rich Repeat 215 237 IPR001611 GO:0005515
Tpr4g2392 1004 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 27 1003 - -
Tpr4g2392 1004 Gene3D Ribonuclease Inhibitor 26 184 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2392 Tpr-Chr4 25473834 25477720 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2392 28 1000 Receptor kinase-like Gene Family AT3G47570 42.655 0.0 748
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Tpr4g2392 Pkinase 3.5e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2392 - - gmx:100776429 1286.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g2392 4 25473834 25477720 Tpr4g2392 4 25473834 25477720 ECH