Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2387 ATGACGGACGGTCATCTCTTCAACAATATCACCCTCGGCGGCCGCGGCGGCACTAATCCGGGGCAGATAAAAATATTTTCTGGGGGAATTTTCTGGAAAAGACAGGGGGGTGGTAAATCAATTGAAGTTGACAAAGCTGACATAGTGAGCGTGACATGGATGAAAGTTCCAAGGAGCAATCAACTCGGTGTTCAGATCAAAGACGGTTTGTTCTACAAATTCACTGGATTTCGTGATCAGGATGTCTTAAGTTTGACCAATTTTTTTCAAAACACCTTTGGAATAACTGTAAAGGAGAAGCAGCTTTCTGTTACTGGGCGCAATTGGGGAGAAGTTGATTTAAATGGAAATATGCTGGTTTTCATGGTTGGTTCAAAGCAAGCTTTTGAGGTTCCTTTAGCGGATGTCTCACAAACAAACCTTCAAGGGAAAAATGATGTGATATTGGAGTTCCATGTGGATGACACAACTGGAGCCAATGAGAAAGATTCATTGATGGAGATAAGTTTCCATATACCGAATTCCAACACCCAGTTTGTTGGTGATGTAAATACCTCCCCTGCTCAGGTTTTCTGTAATAACATAGTATCTGTGGCTGATGTTGGTGCTGGAGGTGAAGATGCTGTTGTTACATTTGAGGGTATTGCAATCCTTACACCAAGGGGACGATATAGTGTTGAGTTACACCTGTCATTCTTGCGGCTTCAAGGACAGGCTAATGATTTTAAAATACAGTATAGCAGTGTGGTTCGACTATTTTTACTTCCTAAGTCTAATCAGCCACATACCTTCGTCGTTATTAGCCTTGATCCACCTATTCGGAAAGGACAAACTTTGTACCCTCATATTGTGATGCAGTTCGAAACAGATTCTGTGGTTGATAGTGAATTGGCATTAAGTGAAGATCTTTATAACTCTAAGTACAAAGACAAGTTGGAGCTGTCTTATAAGGGGCTTATCCATGAAGTGTTCACCACAATATTACGCGGGTTGTCTGGGGCTAAAGTTACCAAGCCTGGAAAATTTAGGAGTTGTCAAGATGGTTACGCTGTGAAATCATCTCTGAAAGCTGAGGATGGAATTTTGTATCCCCTTGAGAAGAGCTTCTTCTTTCTACCTAAACCTCCCACTCTTATTACACACGAAGAGATTGACTTTGTGGAATTTGAGCGACATACTGCTGGTGGTTCAAATATGCATTATTTTGACCTTCTTATCAGACTAAAATCTGACCAGGAGCATCTCTTCCGTAATATTCAAAGAAATGAGTACCACAATTTGTACGGTTTCATAAGTTCAAAGGGCTTGAAAATTATGAATTTAGGAGATGGCCAAGCCGGTGTTGATAAGGTTCTTGAGAGTGATGATGATGACGCTGTTGATCCCCATCTTGAGCGCATCAGAAATGAAGCTGGCGAAGATGATAGTGATGAGGAGGATTCAGATTTTGTTGCCGGAGAGTATGATGAAGGGTCTCCTACTGACGATTCTGGGGCAGATGATTCTGATGCTAGTCAAAGTGGTGATGAGATAGAGAAGCCTGCCAAAAAGGAGCCAAAGAAGGATCTTCCTCCTTCTAACTCTAAGGCATCTTCTTCTAAGAAGAAATCAAAAGATGCCGATGAGGATGGAAAGAAGAGAAAACCGAAGAAGAAAAAGGATCCAAATGCACCCAAGAGGGCATTGTCTGGATTCATGTTCTTTTCTCAAATGGAAAGAGAGAATATAAAGAAAACTAATCCTGGGATTTCATTTATTGATGTTGGAAGAGTACTTGGAGAGAAATGGAATAAGATGTCAGTGGAGGAGAAGGAGCCATATGAGGCAAAAGCCCGTGTTGATAAAATACGTTACAAGGATGAGATTAGTGGCTACAAGAATCAACAAGCACAACCACAACCACAACCGATGAATATTGATTCAGGAAATGAATCTGACAGCCCCTAA 1947 0.4124 MTDGHLFNNITLGGRGGTNPGQIKIFSGGIFWKRQGGGKSIEVDKADIVSVTWMKVPRSNQLGVQIKDGLFYKFTGFRDQDVLSLTNFFQNTFGITVKEKQLSVTGRNWGEVDLNGNMLVFMVGSKQAFEVPLADVSQTNLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFVGDVNTSPAQVFCNNIVSVADVGAGGEDAVVTFEGIAILTPRGRYSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVVISLDPPIRKGQTLYPHIVMQFETDSVVDSELALSEDLYNSKYKDKLELSYKGLIHEVFTTILRGLSGAKVTKPGKFRSCQDGYAVKSSLKAEDGILYPLEKSFFFLPKPPTLITHEEIDFVEFERHTAGGSNMHYFDLLIRLKSDQEHLFRNIQRNEYHNLYGFISSKGLKIMNLGDGQAGVDKVLESDDDDAVDPHLERIRNEAGEDDSDEEDSDFVAGEYDEGSPTDDSGADDSDASQSGDEIEKPAKKEPKKDLPPSNSKASSSKKKSKDADEDGKKRKPKKKKDPNAPKRALSGFMFFSQMERENIKKTNPGISFIDVGRVLGEKWNKMSVEEKEPYEAKARVDKIRYKDEISGYKNQQAQPQPQPMNIDSGNESDSP* 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2387 648 Pfam HMG (high mobility group) box 558 626 IPR009071 -
Tpr4g2387 648 PRINTS Structure-specific recognition protein signature 219 235 IPR000969 GO:0003677|GO:0005634
Tpr4g2387 648 PRINTS Structure-specific recognition protein signature 241 257 IPR000969 GO:0003677|GO:0005634
Tpr4g2387 648 PRINTS Structure-specific recognition protein signature 264 280 IPR000969 GO:0003677|GO:0005634
Tpr4g2387 648 PRINTS Structure-specific recognition protein signature 329 342 IPR000969 GO:0003677|GO:0005634
Tpr4g2387 648 PRINTS Structure-specific recognition protein signature 356 374 IPR000969 GO:0003677|GO:0005634
Tpr4g2387 648 PRINTS Structure-specific recognition protein signature 374 391 IPR000969 GO:0003677|GO:0005634
Tpr4g2387 648 PRINTS Structure-specific recognition protein signature 400 416 IPR000969 GO:0003677|GO:0005634
Tpr4g2387 648 PRINTS Structure-specific recognition protein signature 416 434 IPR000969 GO:0003677|GO:0005634
Tpr4g2387 648 Gene3D High mobility group box domain 541 637 IPR036910 -
Tpr4g2387 648 Gene3D - 1 93 IPR011993 -
Tpr4g2387 648 MobiDBLite consensus disorder prediction 621 648 - -
Tpr4g2387 648 Gene3D - 95 179 IPR038167 -
Tpr4g2387 648 Pfam Histone chaperone Rttp106-like 350 439 IPR013719 -
Tpr4g2387 648 SUPERFAMILY PH domain-like 206 440 - -
Tpr4g2387 648 MobiDBLite consensus disorder prediction 488 565 - -
Tpr4g2387 648 Pfam POB3-like N-terminal PH domain 7 98 IPR035417 -
Tpr4g2387 648 PANTHER FACT COMPLEX SUBUNIT SSRP1-B 1 646 - -
Tpr4g2387 648 SMART Rtt106_2 348 441 IPR013719 -
Tpr4g2387 648 SMART hmgende2 557 627 IPR009071 -
Tpr4g2387 648 Pfam Structure-specific recognition protein (SSRP1) 106 174 IPR024954 -
Tpr4g2387 648 CDD PH2_SSRP1-like 342 441 - -
Tpr4g2387 648 CDD PH1_SSRP1-like 207 340 - -
Tpr4g2387 648 MobiDBLite consensus disorder prediction 624 648 - -
Tpr4g2387 648 SUPERFAMILY HMG-box 545 628 IPR036910 -
Tpr4g2387 648 MobiDBLite consensus disorder prediction 532 549 - -
Tpr4g2387 648 PANTHER FACT COMPLEX SUBUNIT SSRP1 1 646 - -
Tpr4g2387 648 Gene3D - 199 338 - -
Tpr4g2387 648 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 558 626 IPR009071 -
Tpr4g2387 648 CDD HMGB-UBF_HMG-box 560 623 - -
Tpr4g2387 648 Gene3D - 339 447 IPR011993 -
Tpr4g2387 648 MobiDBLite consensus disorder prediction 506 524 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2387 Tpr-Chr4 25405508 25411441 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2387 554 629 ARID Transcription Factor Family AT1G04880 38.158 6.06e-09 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Tpr4g2387 POB3_N 3.7e-23 CL0266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2387 K09272 - gmx:100805034 1074.69