Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2377 ATGTGCAGTGGTTCAAAAAGTAAACTTTCTTCATCAGATTACAACATGGAGGATAAGCTTCAGAAGGGTATCCACAACTCCTCAATCTTGCTTGAATTGTCTGCATCTGATGATTTTGATGCTTTCAAAAGAGAAGTAGATGAGAAGGGTTTGGATGTGAATGAAGAAGGCTTTTGGTATGGTAGAAGAATCGGATCGAAGAAGATGGAATCCGAAAAGAGGACTCCACTCACTATTGCTTCCTTGTTTGGAAGCACTAAGGTGCTCAAGTATATTGTTTTGACAGGAAAGGTTGATGTCAACCGAGTTTGTGGCTCCGATATGGTCACTGCTCTTCATTGTGCTGTTGCTGGTGGTTCTGAATTTTCGCTTGAAGTTGTCAAGCTCTTGCTTGATGCTGGAGCAGATGTTGATTGTCTTGATGCTAATGGAAACAAACCGGTCGATCTGATTGCGCCTGCTTTTAATACTTCGTCCAAATCGCGTAGGAAGGTGTTGGAGATGTTTTTGAGAGGCGAGGTTAGTGCTGAACTCGTCCAAGGGGAGATGGATGCTTCTTTCTCATTGAAGAAAGATGGCGGTGATAAGAAAGAATATCCTATTGATATATCGTTGCCAGACATAAACAACGGTGTATATGGATCAGATGACTTTAGGATGTACAGTTTCAAGGTGAAGCCGTGCTCAAGGGCTTATTCTCATGATTGGACCGAGTGTCCGTTCGTTCATCCAGGTGAGAACGCAAGGAGAAGAGACCCAAAGAAATATCCTTACAGCTGTGTTCCTTGCCCAGAGTTTCGCAAAGGATCCTGCCAGAAAGGGGATTCTTGCGAGTATGCGCACGGTGTTTTTGAGTCATGGCTACATCCTGCACAATACCGAACAAGGCTTTGCAAAGACGAGACTGGCTGCAATAGGAAAGTTTGCTTCTTTGCTCACAAACCCGAAGAGTTGCGCCCTGTGTATGCTTCCACCGGATCAGCTATGCCTTCACCAAAGTCATATTCAGCTAATGCAATTGACATGACATCGATGAGTCCGTTGTCTCTTAGCTCCACATCTTTGCCTATGTCAACCGTTTCAACACCGCCCATGTCTCCCTTGGCAGGTTCATCATCTCCCAAGAGTGGAAACTTGTGGCAGAACAAAATAAACCTCACTCCACCATCATTGCAGCTACAAGGTAGCCGGTTGAAGAGTGCTTTGAGTGCCAGGGATATGGATCTTGAGATGGAACTGCTCGGTCTTGACAGTCCTCGTCGTCAACAACAACAGCTTCAACAACAACAATTGATTGAAGAGATTGCTAGAATCTCTTCCCCTTCTTTCCGGAACAACGAATTCAACAGAATTGCTGATTTGAATCCAACTAACCTTGATGACCTATTAGCATCTGCTGATCCTAATTTACTCTCTCAACTACATGGACTTTCCATGCAGCCTTCAACACCCACACAACAGATGCAATCTCCAAGTGCGATGCAGATGCGCCAAAACATGAACATGAACATGAGCCAAAACATGAACATGAACCACCATCGCGCAAGTTATCCATCCAATAATATGCCTTCCTCCCCAGTGAGGAAACCCTCAGCATATGGATTTGATTCATCGGCTGCCGTGGCAGCTGCAGTGATGAATTCCAGGTCTTCTGCCTTCGCAAAGCAGCGCAGCCAAAGTTTCATTGACCGCGGTGCTGCTAACCACCATCTCGGACTGTCTTCGCCTTCCAACACTTCCAGCAGGATGTCCTCTGGCCTTTCAGATTGGGGTTCCCCCACCGGAAAACTCGATTGGGGTGTAAATGGAGATGATCTGAACAAGCTAAGAAAATCTGCTTCTTTTGGGTTCAGAAATAACCCGGCAGCACCAACTCCATCCCAACATGCTGAGCCTGATGTCTCTTGGGTTAATTCATTGGTTAAGGATGTTCCCTCCGAGAATTCCGACATATATGGCGGTGAGAATATGCGGCAGCTACAGCAATATGATCTGAGTAGAGAGATGCTTCCACCATGGGTGGAACAGATGTACATAGAGCAGGAGCAGATGGTAGCATGA 2061 0.4575 MCSGSKSKLSSSDYNMEDKLQKGIHNSSILLELSASDDFDAFKREVDEKGLDVNEEGFWYGRRIGSKKMESEKRTPLTIASLFGSTKVLKYIVLTGKVDVNRVCGSDMVTALHCAVAGGSEFSLEVVKLLLDAGADVDCLDANGNKPVDLIAPAFNTSSKSRRKVLEMFLRGEVSAELVQGEMDASFSLKKDGGDKKEYPIDISLPDINNGVYGSDDFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPKKYPYSCVPCPEFRKGSCQKGDSCEYAHGVFESWLHPAQYRTRLCKDETGCNRKVCFFAHKPEELRPVYASTGSAMPSPKSYSANAIDMTSMSPLSLSSTSLPMSTVSTPPMSPLAGSSSPKSGNLWQNKINLTPPSLQLQGSRLKSALSARDMDLEMELLGLDSPRRQQQQLQQQQLIEEIARISSPSFRNNEFNRIADLNPTNLDDLLASADPNLLSQLHGLSMQPSTPTQQMQSPSAMQMRQNMNMNMSQNMNMNHHRASYPSNNMPSSPVRKPSAYGFDSSAAVAAAVMNSRSSAFAKQRSQSFIDRGAANHHLGLSSPSNTSSRMSSGLSDWGSPTGKLDWGVNGDDLNKLRKSASFGFRNNPAAPTPSQHAEPDVSWVNSLVKDVPSENSDIYGGENMRQLQQYDLSREMLPPWVEQMYIEQEQMVA* 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2377 686 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 262 282 IPR000571 GO:0046872
Tpr4g2377 686 SMART c3hfinal6 292 315 IPR000571 GO:0046872
Tpr4g2377 686 SMART c3hfinal6 257 283 IPR000571 GO:0046872
Tpr4g2377 686 Gene3D - 24 173 IPR036770 -
Tpr4g2377 686 Pfam Ankyrin repeats (3 copies) 70 139 IPR002110 GO:0005515
Tpr4g2377 686 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 29 17 685 - -
Tpr4g2377 686 Gene3D - 258 320 - -
Tpr4g2377 686 ProSiteProfiles Ankyrin repeat profile. 107 142 IPR002110 GO:0005515
Tpr4g2377 686 SUPERFAMILY Ankyrin repeat 23 161 IPR036770 -
Tpr4g2377 686 ProSiteProfiles Ankyrin repeat region circular profile. 107 141 - -
Tpr4g2377 686 SMART ANK_2a 72 102 IPR002110 GO:0005515
Tpr4g2377 686 SMART ANK_2a 107 139 IPR002110 GO:0005515
Tpr4g2377 686 ProSiteProfiles Zinc finger C3H1-type profile. 257 284 IPR000571 GO:0046872
Tpr4g2377 686 PANTHER UNKEMPT FAMILY MEMBER 17 685 IPR045234 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2377 Tpr-Chr4 25242576 25245746 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2377 25 681 C2H2 Transcription Factor Family AT5G12850 39.202 3.24e-144 435
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tpr4g2377 Ank_2 3.5e-06 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2377 - - gmx:100783376 977.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g0962 7 8887489 8901395 Tpr4g2377 4 25242576 25245746 ECH
Tpr4g2377 4 25242576 25245746 Tpr4g2377 4 25242576 25245746 ECH