Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2370 ATGATTAGCGCAAACTCAAATTCCAATTCCAATTCCAATGGCGGCGGTGGTGGTGTCGATGAAAACGGCGATAAAGTGAAAGGTTCATGGAGTCCACAAGAAGATGAAACATTGGTGAAATTGGTAAATGAATATGGTGCAAGAAACTGGTCTGTCATAAGCAACGGAATCCCTGGCCGTTCTGGAAAATCATGCCGTCTACGGTGGTGTAATCAGCTGAGTCCCGACGTTCAACACCGTCCATTTACTCCGGCGGAAGATAACATCATAATTCAAGCGCACGCAGTTCATGGAAACAAATGGGCGACGATTTCGCGTCTTTTACCAGGTAGAACTGATAACGCGATTAAAAATCACTGGAATTCGACTCTCCGCCGTCGTCGTACGGAGGCGGCGACGGTGACTCCGATAATGCCGGTGGTTTCATCCACCGTGAATATCGGAAAACGTGGGTCGAATATGTATGACGGTTATAATAATGGTTTGTTGGATCTCGGTTACGGTTATAAACGGCAATGTGTTGAGAATAATAATAATAATAATAATAATAATAATAACGGTTCACGTGACGGTGAAGAAACGGTTACGGAAGAAGAAGATGCGGGTAATGGTGTTACGGTTATGACGTCGTTAAGTTTGTTTCCACCTGGTGAGAAATTGATCAAAGAAGAGAAAGAGAAAAAGGAAAAGGAACGAGATTTTGATTTTGATGATAATTTGAAGTTACTGGGAAATGATAATTTGAGGTCGATTATTCAGCGTATGATAGCAGAAGAAGTTAGGAATTATGTTGATAACCTTGATGGGTTTCAACTTGGAACTCCTGATTCAAGAAAGTGA 840 0.419 MISANSNSNSNSNGGGGGVDENGDKVKGSWSPQEDETLVKLVNEYGARNWSVISNGIPGRSGKSCRLRWCNQLSPDVQHRPFTPAEDNIIIQAHAVHGNKWATISRLLPGRTDNAIKNHWNSTLRRRRTEAATVTPIMPVVSSTVNIGKRGSNMYDGYNNGLLDLGYGYKRQCVENNNNNNNNNNNGSRDGEETVTEEEDAGNGVTVMTSLSLFPPGEKLIKEEKEKKEKERDFDFDDNLKLLGNDNLRSIIQRMIAEEVRNYVDNLDGFQLGTPDSRK* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2370 279 CDD SANT 81 124 IPR001005 -
Tpr4g2370 279 Gene3D - 81 127 - -
Tpr4g2370 279 Pfam Myb-like DNA-binding domain 81 123 IPR001005 -
Tpr4g2370 279 Pfam Myb-like DNA-binding domain 27 73 IPR001005 -
Tpr4g2370 279 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 74 128 IPR017930 -
Tpr4g2370 279 MobiDBLite consensus disorder prediction 1 33 - -
Tpr4g2370 279 Gene3D - 26 78 - -
Tpr4g2370 279 SMART sant 26 75 IPR001005 -
Tpr4g2370 279 SMART sant 78 126 IPR001005 -
Tpr4g2370 279 ProSiteProfiles Myb-like domain profile. 74 124 IPR001005 -
Tpr4g2370 279 SUPERFAMILY Homeodomain-like 24 120 IPR009057 -
Tpr4g2370 279 ProSiteProfiles Myb-like domain profile. 22 73 IPR001005 -
Tpr4g2370 279 MobiDBLite consensus disorder prediction 177 200 - -
Tpr4g2370 279 CDD SANT 29 71 IPR001005 -
Tpr4g2370 279 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 22 73 IPR017930 -
Tpr4g2370 279 MobiDBLite consensus disorder prediction 1 17 - -
Tpr4g2370 279 PANTHER TRANSCRIPTION FACTOR MYB44-LIKE 5 239 - -
Tpr4g2370 279 PANTHER MYB PROTEIN-RELATED 5 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2370 Tpr-Chr4 25149741 25151115 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2370 23 273 MYB Transcription Factor Family AT3G50060 37.634 7.04e-54 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr4g2370 Myb_DNA-binding 4.8e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2370 - - cam:101514420 336.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g2370 4 25149741 25151115 Tpr4g2370 4 25149741 25151115 ECH