Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2369 ATGTCTAACCACAACAGCATCAAAACATTCGACTGGACATTCGACACACAACCCGAAGAAGAACCACTCCAAATCAAAGGCGGAAAACTCCTCTTCTTCATCGCAATCTTCACCATCATCATCCTCTTCACTTTAATCTTCCTCTGTGCCCGTTGGATCTTCCATAACCGTGGCTTTCTCAATCCTCCTCAAGCACCGTCACACACAACCGCATTTCCTTCTCCATCAGAAGGACTCGACGAGGACGATATCAAGAAGCTTCCGATTATATTACATCAAACAGATTATTCCAATCGCGCTTTGGAGGAAATGGAATGTTGTATTTGTTTAAGTGCTTTTAGAGATGGTGAGAAGGTGAAAGTGTTGCCGAGTTGTGATCATTGTTTTCATTGTGAGTGTGTTGATGTTTGGCTTATGAATCATTCTAGTTGTCCTTTGTGTAGAGCTTCTCTTAAAATCGATTATACGTTTCCGCAGATTTTGATTCAAGAACCACCTATTAGATATAATAATAATAATGTTCCACTTTAA 531 0.4011 MSNHNSIKTFDWTFDTQPEEEPLQIKGGKLLFFIAIFTIIILFTLIFLCARWIFHNRGFLNPPQAPSHTTAFPSPSEGLDEDDIKKLPIILHQTDYSNRALEEMECCICLSAFRDGEKVKVLPSCDHCFHCECVDVWLMNHSSCPLCRASLKIDYTFPQILIQEPPIRYNNNNVPL* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2369 176 Pfam Ring finger domain 105 148 IPR001841 -
Tpr4g2369 176 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Tpr4g2369 176 SUPERFAMILY RING/U-box 96 155 - -
Tpr4g2369 176 CDD RING-H2_EL5_like 105 148 - -
Tpr4g2369 176 PANTHER RING-H2 FINGER PROTEIN ATL66 5 163 - -
Tpr4g2369 176 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 154 IPR013083 -
Tpr4g2369 176 SMART ring_2 106 147 IPR001841 -
Tpr4g2369 176 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 5 163 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2369 Tpr-Chr4 25137695 25138505 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2369 15 156 C3H Transcription Factor Family AT3G11110 40.000 1.99e-27 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2369 - - gmx:100794554 177.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g0973 7 8992004 8992742 Tpr4g2369 4 25137695 25138505 PCT