Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2368 ATGGACTCACCTCTTCATCATCATCTTCAAGAAACCAAACCCACCGCCAACACCGATGTTACTACCACTCTTAGTGAAACATCTAACAACAGCACTGATGATTCGTCATCAGTGCAGTTGTTAGATAATAATAACAGCACCAGCACCGCCAACACCAACACCAACAATAATAACAATAAACAGAACCGTAAATGTAAAGGTAAAGGTGGACCTGATAACAATAAGTTTCGTTATCGTGGTGTTAGACAACGTAGTTGGGGTAAATGGGTTGCTGAAATTCGTGAACCACGTAAACGTACTCGTAAATGGCTTGGTACTTTTTCAACTGCTGAAGATGCTGCTAAAGCTTATGATCGTGCTGCTACTATTCTTTATGGTTCTAGAGCTCAACTTAATCTTCAACCTTCTAATAACAACTCTCATAACTCTTCTTCTTCTTCTTCATCATCCTCTTCGTCTCGATTAAATTCTTCCAATAATACCCTTCGTCCTTTACTTCCTCGTCCTTCTGGTTACTCTTTCACTTACCCTTTTGCTTTTTACAATCATTTTCTTCATCATAATCATCATTATAATTATAATAATAATCCTCATCAAGAAATGGTGCAACTTCAACAGAATCAAGAATATCGTCATCAGCAGCAGCTATGTCATCAAGATTTTGAACATGCAAGTGGTGATTTTGGTAGATCAGTTATCTCGTACCAGAATCATGTTCATGGTACTAAATATGTTGATGAAGAAGAATTGCATGCACAACATGTTTTGAACATTCAGCAACAGAATCAGATGAATAATAATAATAATATTCAGAATTGTGTGGTTGAGAGTTCTTTGGTGGGGTCATCAAGTTTTGAGGGTTCTTCTCAAAATAATAATATTGATGGAACAGTGGTGGATCCAGATCCAGTTTGTGATTCTATGTGGCCAGCTTTGACAAATGAAGAAGATTATACAACAACTAGTTTATGGGATTATAATGATAATTTCTTCTTTGATTTTTGA 1005 0.3632 MDSPLHHHLQETKPTANTDVTTTLSETSNNSTDDSSSVQLLDNNNSTSTANTNTNNNNNKQNRKCKGKGGPDNNKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFSTAEDAAKAYDRAATILYGSRAQLNLQPSNNNSHNSSSSSSSSSSSRLNSSNNTLRPLLPRPSGYSFTYPFAFYNHFLHHNHHYNYNNNPHQEMVQLQQNQEYRHQQQLCHQDFEHASGDFGRSVISYQNHVHGTKYVDEEELHAQHVLNIQQQNQMNNNNNIQNCVVESSLVGSSSFEGSSQNNNIDGTVVDPDPVCDSMWPALTNEEDYTTTSLWDYNDNFFFDF* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2368 334 Pfam AP2 domain 77 122 IPR001471 GO:0003700|GO:0006355
Tpr4g2368 334 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 25 332 - -
Tpr4g2368 334 MobiDBLite consensus disorder prediction 65 79 - -
Tpr4g2368 334 MobiDBLite consensus disorder prediction 134 164 - -
Tpr4g2368 334 MobiDBLite consensus disorder prediction 1 80 - -
Tpr4g2368 334 MobiDBLite consensus disorder prediction 14 64 - -
Tpr4g2368 334 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ABI4 25 332 - -
Tpr4g2368 334 Gene3D AP2/ERF domain 76 134 IPR036955 GO:0003700|GO:0006355
Tpr4g2368 334 ProSiteProfiles AP2/ERF domain profile. 77 134 IPR001471 GO:0003700|GO:0006355
Tpr4g2368 334 SMART rav1_2 77 140 IPR001471 GO:0003700|GO:0006355
Tpr4g2368 334 SUPERFAMILY DNA-binding domain 77 135 IPR016177 GO:0003677
Tpr4g2368 334 PRINTS Ethylene responsive element binding protein signature 78 89 IPR001471 GO:0003700|GO:0006355
Tpr4g2368 334 PRINTS Ethylene responsive element binding protein signature 100 116 IPR001471 GO:0003700|GO:0006355
Tpr4g2368 334 CDD AP2 77 134 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2368 Tpr-Chr4 25125921 25126925 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2368 41 170 AP2-EREBP Transcription Factor Family AT2G40220 67.153 8.13e-38 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tpr4g2368 AP2 6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2368 K09286 - gmx:100779779 204.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g2368 4 25125921 25126925 Tpr4g2368 4 25125921 25126925 ECH