Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2365 ATGAATGATCCTAGATCAAAAATGATGATTTCTCCTGGATTATTACCAAATGAATCATTACTAGATTCATTGGTTTTAATAACCAATGAAGTTAGTTCAATTGAAAAATTTCCATTAGTACAAATTAAAAATGTATCATCTATGATAAGAAGGATTAAGCTTCTTTCATCTTTGTTTGAAGAGATTCAAGAATCAGATACACCACTTCCACCTTCATCAATTCTTTGTTTTACAGAAATATTTTCTGTGATTACAAGAGTGCAGATTTTGATTCAAGAGTTGAAAGATGGAAGTTCTCTTTGGAGTTTATTACAATTAGAGTTCATTTCTAATCAATTTTTTGTGCTTGTAAAAGAATTTGGAAGAGCTTTTGATATTCTTCCTTTGAATTTGCTTAATATAACTTATGATATTAAGGAGCAAATTGAGCTTGTGCATAAACAAGCTAAGAGAGTTGAATTGTTCATTGATCCTAGGGAAGTTCAAAGAAGAGAAAAGCTTTTAGAAGTAATGTCGAAAAATTGTTTGAAAAATAATAAGAACAATAAAGGGTTTATTGATTTTTTGAAAGTTGAAGAAATTATGAGTAGCATTGGTTTGATAACTTTATCGGATTATGTCGAAGAAATATCGAAGTTAGAAGTTGAAGCTCAGAATCAAGCAGGCACAGGTGGACTTATTGTCGTCTCAAATATAAACAATCTCATTTTGCTCGTTTCGTATACCAAATCAATGGTATTCCGAAACGGAGAAAAAAGTGATGGCGAATATTCGGATGAGAGTAAGTCATCATTATCTATGATTTTATACAACAAAAGTAAAATATATGATAATGATAGTTCTTCTTCATCTTCTTTTTCTCAATCCATGATGTCGTCGACAATTAATATTCCAGACGAATTCCGTTGTCCGATTTCGCTAGACCTAATGAGGGATCCTGTGATTGTTTCATCAGGACATACTTATGACCGAATTTCGATTGCAGAATGGATAAATTCTGGTCACCATACTTGTCCTAAAAGTGGCCAAAGACTAATTCATACTGCATTGATACCAAACTATGCATTGAAGAGCCTTGTTCATCAATGGTGCTACGAAAACAACGTCTCGGTGAACGAACCAAAGGGAAACAACAACAGTGGCAGTAGCAGCAAAAGGCACAAGAATGAGAATGCAATTGATCATATCTCAGCAAACAAAGCATCAAAAGATGCTGTCAAAATGACAGCAGAGTTTCTTGTTGGAAAATTAGCAACCGGTTCAACCGATATCCAAAGACAATCCGCATACGAGATTCGTCTGCTCGCGAAAACCGGTATGGCCAACCGACAAATCATAGCCGAGGTAGGCGCTATTCCGTTTCTAGTAACACTTTTAGTATCCAAAGATTCAAGAATCCAAGAACACGTCGTAACCGCCTTGTTCAACCTATCGATCTACGACAACAATAAGATTCTAATCATGGCCGCCGGAGCGGTCGACAACATAGTCGAAGTACTCGAATCGGGAAAAACAATGGAAGCAAGAGAAAATGCTGCAGCAGCAATATATAGCTTATCAATGTTAGATGATTGTAAAGTGCAAATTGGAACAAGTTCAAAAGCAATACCTGCATTAGTGTTACTTTTAAAAGAAGGTACACCAATTGGTAAAAGAGATGCTGCTATTGCATTGTTTAATCTTGCAGTTTATAATCCTAATAAGTTAAGTATTGTTAAAAGTGGAGCAGTTACTTTACTTGTTGAGTTGTTGATGGATGATAAAGCCGGTATAACCGACGATTCATTGGCGGTGTTGGCCGTGTTATTAGGTTGTTCACAAGGGTTAGAAGAGATAAAAAATTGTAAAAGTTTGGTGCCTATTCTTATTGATCTTTTGAGATTTGGTTCGGTTAAAGGGAAGGAAAATTCGATAACCGTTTTACTCGGATTGTGTAAAGAAGAAGGAGAATTGGTTGCAAGGAAATTGTTGGCAAATCCAAGGAGTATTCCATCTCTTCAAAGTTTGGCTGCTGATGGTTCTTTGAGAGCTAGAAGAAAAGCTGATGCATTGCTTAGGTTGCTTAATAGAGATTGTATGGAGCTGGAGGTCGTAGGATTATTGTGGCAGGTCTTCCTCCAATTGGTTGTGTTCCAATACTAG 2142 0.3585 MNDPRSKMMISPGLLPNESLLDSLVLITNEVSSIEKFPLVQIKNVSSMIRRIKLLSSLFEEIQESDTPLPPSSILCFTEIFSVITRVQILIQELKDGSSLWSLLQLEFISNQFFVLVKEFGRAFDILPLNLLNITYDIKEQIELVHKQAKRVELFIDPREVQRREKLLEVMSKNCLKNNKNNKGFIDFLKVEEIMSSIGLITLSDYVEEISKLEVEAQNQAGTGGLIVVSNINNLILLVSYTKSMVFRNGEKSDGEYSDESKSSLSMILYNKSKIYDNDSSSSSSFSQSMMSSTINIPDEFRCPISLDLMRDPVIVSSGHTYDRISIAEWINSGHHTCPKSGQRLIHTALIPNYALKSLVHQWCYENNVSVNEPKGNNNSGSSSKRHKNENAIDHISANKASKDAVKMTAEFLVGKLATGSTDIQRQSAYEIRLLAKTGMANRQIIAEVGAIPFLVTLLVSKDSRIQEHVVTALFNLSIYDNNKILIMAAGAVDNIVEVLESGKTMEARENAAAAIYSLSMLDDCKVQIGTSSKAIPALVLLLKEGTPIGKRDAAIALFNLAVYNPNKLSIVKSGAVTLLVELLMDDKAGITDDSLAVLAVLLGCSQGLEEIKNCKSLVPILIDLLRFGSVKGKENSITVLLGLCKEEGELVARKLLANPRSIPSLQSLAADGSLRARRKADALLRLLNRDCMELEVVGLLWQVFLQLVVFQY* 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2365 713 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 534 576 IPR000225 GO:0005515
Tpr4g2365 713 SMART arm_5 439 479 IPR000225 GO:0005515
Tpr4g2365 713 SMART arm_5 480 521 IPR000225 GO:0005515
Tpr4g2365 713 SMART arm_5 564 604 IPR000225 GO:0005515
Tpr4g2365 713 SMART arm_5 605 646 IPR000225 GO:0005515
Tpr4g2365 713 SMART arm_5 522 563 IPR000225 GO:0005515
Tpr4g2365 713 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 450 492 IPR000225 GO:0005515
Tpr4g2365 713 Pfam Armadillo/beta-catenin-like repeat 442 478 IPR000225 GO:0005515
Tpr4g2365 713 Gene3D - 372 523 IPR011989 -
Tpr4g2365 713 PANTHER U BOX DOMAIN-CONTAINING 17 694 - -
Tpr4g2365 713 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 1 17 694 - -
Tpr4g2365 713 SUPERFAMILY RING/U-box 285 371 - -
Tpr4g2365 713 SUPERFAMILY ARM repeat 409 688 IPR016024 -
Tpr4g2365 713 Gene3D - 530 703 IPR011989 -
Tpr4g2365 713 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 296 371 IPR013083 -
Tpr4g2365 713 SMART Ubox_2 300 363 IPR003613 GO:0004842|GO:0016567
Tpr4g2365 713 Pfam U-box domain 297 367 IPR003613 GO:0004842|GO:0016567
Tpr4g2365 713 CDD RING-Ubox_PUB 301 343 IPR045210 -
Tpr4g2365 713 ProSiteProfiles U-box domain profile. 296 370 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2365 Tpr-Chr4 25056804 25061113 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2365 19 690 U-box Gene Family AT3G46510 36.337 2.64e-122 378
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2365 - - cam:101513231 1066.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g2365 4 25056804 25061113 Tpr4g2365 4 25056804 25061113 ECH