Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2352 ATGGGTGGAAATTCACCATGTGCTTCATGCAAGCTTTTGAGACGCAGATGTGCAAAAGATTGCGCTTTTGCTCCTTATTTTCCTTCTCATGAACCTCAAAAGTTTGCTATTGTTCATAAGGTTTTTGGGGCTAGCAACGTTAGCAAAATGTTGCAGGAGCTTCCAATTCACCAAAGAGCAGATGCAGTGAGTAGTTTAGTCTATGAAGCAAATGCAAGAGTGAGAGATCCAGTTTATGGTTGTGTTGGAGCAATATCTTATTTACAAAATCAAGTTTCTGAGCTTCAAATGCAACTTGCAGTTGCTCAAGCAGAAATACTTTGCATCCAAATGCAAAATGAACAAGTGATTCCAACACAAGAAATTAATCAAGATCAGAAATCTTATTTTATTCAAGATGAACTCACTCAATATCTTAATTATGGTTCTTCTTCTAGTAATAATAATGTAATTCATGATTCTCTTAAGAGAGATAATATGTATGGACATGATATGGTTTCTTGA 504 0.3532 MGGNSPCASCKLLRRRCAKDCAFAPYFPSHEPQKFAIVHKVFGASNVSKMLQELPIHQRADAVSSLVYEANARVRDPVYGCVGAISYLQNQVSELQMQLAVAQAEILCIQMQNEQVIPTQEINQDQKSYFIQDELTQYLNYGSSSSNNNVIHDSLKRDNMYGHDMVS* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2352 167 Coils Coil 85 105 - -
Tpr4g2352 167 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Tpr4g2352 167 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
Tpr4g2352 167 PANTHER LATERAL ORGAN BOUNDARIES (LOB) DOMAIN PROTEIN 1 161 - -
Tpr4g2352 167 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2352 Tpr-Chr4 24898864 24900539 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2352 3 131 AS2 family AT2G30130 79.699 2.15e-75 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Tpr4g2352 LOB 5.3e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2352 - - lang:109360574 270.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g0986 7 9199094 9200465 Tpr4g2352 4 24898864 24900539 ECH
Tpr4g2352 4 24898864 24900539 Tpr4g2352 4 24898864 24900539 ECH
Tpr7g0986 7 9199094 9200465 Tpr4g2352 4 24898864 24900539 PCT