Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2344 ATGAACAGAAAAAGGCGTCTAAATCAATCGACCACTGCAATCGATTCTCACCCCTTCGAAGCAGTTACCTTTGGCTCATGGCATCCGGTGGAGTTCATAAAAGTTAAGTCGGGAACTGTAACCATACATTTTGCAGATAATCACCATATGGTTATGGACAAAGGTACTTTATCAGACATTCGTATGAGGTCAAGGAAAACTACAGTGTCAGATTGCTCTTGTTTCTTACGTCCTGGAATCGACATCTGCGTGCTATCACCCCCTCAACGAGCCAAGGATGCAGTTGGTTCAAATCTCGAGCCCGTTTGGATGGATGCTAGAATAAGTTCTATACAGAGAAAGCCTCATGGCGCAGAGTGCTCGTGTCAGTTTTTCGTCAATTTCTATGTTGATCAAGGTTCACTTGGTTTAGAGATGAGAACTCTTTGTAAGGATATCAAAGTATTCAGACTCAATCAGATCTCCATCCTCCAAAGAATTGAACATAGTCCTTGTGAAAATAAGCCCTACCGTTGGTCTTCATCCGAAGATTGCTCTTCGTTGCCACACACTAAATTGCTTTTGGGAAAATTTTTATGCGATCTTTCATGGTTAATTGCTACATCGGTTCTCATGAAAGTTGCGTTCTGTGCAAGATCTGTTGAAAACAAGATGGTGTATCAAGTTTTGGGAGGTGATAATAGTATTGGCTCTTCGTCGAACACTGAGTCTCATATTGATGTTATTGGTTTCAAAAACGATAATGGCATGTTAGTACCGATTGCTTCTCAAGTTGCTATAACTAACACCAAGAAAGTTGACCAAGCACAAGAATCCCATACAGATGAAGCGTCGCCGTCTTATAATGTTGACGGCTTACGACGCTCCAAACGCCGGCATGTACAGCCGGATCGTTACCTTGGCTGTGAAGTTAAAGAATTGGATGTTGGTTCCTTTAGAAACAGGCCACCGGTTAGGATAGATACATCCACCAAAGAAGATGACTTGCCGTTATCGTGCTTGTTTCGTTTGCAGCAACAGAAGAGTCCAGAAAAGATCACCGACAAATCTCAGAAGATCAACCTACCGAATCCCTGCCGGGAGCTTCTAGTGTACAACAGGAGGGCTAAAAATCGAGAGGTGAAGAAGTTTAGTGATGTTGATCATAATGAACATCAAAATCCACTTGCTATTATCCCTTTTACTAATCAAGATGCTGATCCAATAGCTGTTGAGCCTAGCGATCAAAACAGCAATGTTGCTAAAAGTGGTGAATCATCTGAAATTTCTTCAAAATATCGTCATTTGATTAATACTCCTAAACCAAGGAAAAACATTAATTTGTTAGATATTCCTGAAAATTCAGAAGATGCTGCGAAGAGCGACGATGTTTCTTCAAGATGTCAATTTTTTGGAACCCCTAAGTTACAAAAGAAGAGTTTAGGTGATTTGGACGCTATGGATCTTGGAAATAGATGGGAAGGGATAAAAAGGAAAACCAATAAAGGATTTAAGGAGGGAAAATATCGTTCAACGTATTTAAGAAATCCCGGCGAAGGAGGAACTCACAGATATAAAGATAGAACATTAAATGCATCTGCATACAAGAATTTGATAAATTCATATTTATCGAATATTAATACAACAATACCGGTCGAAGAAACCCCTATTACTGACCAGTGGAAGAAATGTAACACAACAAATGTTGCTGGACAAAATGAGGAGACGGATGCTTCTCATGAAGAATATGAGAAAGAAAAAGCTGAAGAGGATATGTTGTGGAAAGAACTTGAAGTCGGACTGGCATCAATTTATTTCGATGACTCGGAGGTTTCAAATGCAAACGCTTCTGCCGAGGCTGAGGAAAAGTTGAAAGAAGTTTGTGAACATGATAATAGATTGGATGAAGAAATTGGAATATACTGCATTAGATGTGGCTTTGTGACCACTCATATCAGAGATGTTAATCCAATCTTTGTTGAAAAGGCAGTGTGGCGCCAAGATGAGAAGCCTTGTGATGGAGGAGAAGATAAAGAAGAGCCCACGGCTGATGAAGATGATGATTTCCATTTTTTCCCAACTGATGCTAATCCTGAAGAACCAATATCGGAAGAAAACCAAAGTGTTTGGTCATTAATTCCTGAACTCAAAGAAAAGTTGCATGTGCACCAAAAGAAAGCTTTTGAGTTTCTTTGGCAAAACATTGCAGGGTCATCAAATCCAGCACTAATTGAAGCAGAATCGAAAAAAAGAGGTGGTTGTGTGATATCTCATACTCCTGGAGCCGGAAAAACTTTTCTCATCATTGCTTTTCTTGTTAGCTACTTGAAGTTATTCCCTGGGAAGAGGCCTCTAGTTCTTGCTCCGAAAACTACGCTCTATACTTGGTATAAAGAATTTATCAAGTGGGAGATTCCTATACCGGTGTACTTGATTCACGGTCGTAGAACCTATAGGGTGTTCAAGCAGAATTCAGTTGCAGTTCTTCCTGGAGTTCCTAAGCCTACCGATGATGTCAAACATGTTTTGGATTGCCTTGAGAAGATACAAAAATGGCATTCACATCCGAGTGTTCTAATCATGGGCTACACTTCGTTTTTAACATTGATGCGAGAGGATTCGAAGTTTGCTCACAGAAAGTTTATGGCAAAAGTGTTGAGGGAAAGTCCTCAACTCTTGGTACTTGATGAAGGTCACAATCCTAGAAGCACTAAATCAAGGTTGCGAAAATGTTTGATGAAAGTGCAAACCGAATTGAGAATATTACTTTCTGGTACTTTGTTTCAAAATAATTTCTGTGAATACTTCAACACTCTATGCTTGGCAAGACCAACATTTGCTTACGAAGTGTTGAAAGCATTAGACCCTAAATACAAGAAGAAAAAGAAAGGAGTAGCAGGAAAAGGAGCAGAAAAAGCACAATATTTGATCGAGTCAAGGGCTAGAAAATTCTTCTTAGATACAATCGCTAAGAAAATTGACTCAAATGTTGGTGATGAAAGGCTGCAAGGCTTAAACATGTTGAGAAATGTGACAAATGGTTTTATTGATGTTTATGAAGGTGGAAGTTCTGATGATTTACCTGGTTTACAAATTTATACATTGCTAATGAACACAACCGATATACAGCATGAGATTCTGAAGAAACTTCACAGCGACATGGCTAAATGCAGTGGTTACCCTCTCGAGTTAGAGCTTTTGATAACTCTCGGATCGATACATCCTTGGTTGGTCAAAACCGCGGTATGTTCTCAGAAATTTTTAACAAAGGAGCAATTGAGTGATCTAGATAAGTACAAGTTTGATTTGAAAATTGGTTCAAAAGTAAGATTTGTTTTGAGCCTTATCTACCGTGTTGTCAAGAACGAAAAGGTTCTTATCTTTTGCCACAACATTGCTCCTGTGAAATTATTTCAAGAATATTTTGAGAAGTTCTTTGGATGGCAAAAAGGCCGCGAAGTTTTAGTACTAACCGGGGAACTCGAGCTCTTCGAACGTGGGAAAATAATGGATAAATTTGAGGAACCCGGTAGTGTATCTAAGATACTACTTGCTTCAATTACAGCCTGTGCTGAAGGCATTAGTTTGACAGCAGCGTCTCGTGTGATTATGTTGGATTCAGAGTGGAACCCTTCGAAAACAAAGCAAGCTATTGCACGTGCGTTTCGTCCCGGACAGCAGAAAATGGTTTATGTTTATCAGCTCTTGGTGACAGGTTCATTGGAGGAAGATAAATATCGAAGAACCACATGGAAAGAGTGGGTGTCGAGTATGATTTTCAGCGAGGCGTTTGTCGAGGATCCTTCTCGTTGGCAAGCTGAGAAGATCGAAGATGATATTCTAAGAGAAATGGTCGAGGAGGATAAGTCTAAATCATTTCATATGATTATGAAGAATGAAAAAGCTTCAACAAACAACAGATAA 3903 0.3953 MNRKRRLNQSTTAIDSHPFEAVTFGSWHPVEFIKVKSGTVTIHFADNHHMVMDKGTLSDIRMRSRKTTVSDCSCFLRPGIDICVLSPPQRAKDAVGSNLEPVWMDARISSIQRKPHGAECSCQFFVNFYVDQGSLGLEMRTLCKDIKVFRLNQISILQRIEHSPCENKPYRWSSSEDCSSLPHTKLLLGKFLCDLSWLIATSVLMKVAFCARSVENKMVYQVLGGDNSIGSSSNTESHIDVIGFKNDNGMLVPIASQVAITNTKKVDQAQESHTDEASPSYNVDGLRRSKRRHVQPDRYLGCEVKELDVGSFRNRPPVRIDTSTKEDDLPLSCLFRLQQQKSPEKITDKSQKINLPNPCRELLVYNRRAKNREVKKFSDVDHNEHQNPLAIIPFTNQDADPIAVEPSDQNSNVAKSGESSEISSKYRHLINTPKPRKNINLLDIPENSEDAAKSDDVSSRCQFFGTPKLQKKSLGDLDAMDLGNRWEGIKRKTNKGFKEGKYRSTYLRNPGEGGTHRYKDRTLNASAYKNLINSYLSNINTTIPVEETPITDQWKKCNTTNVAGQNEETDASHEEYEKEKAEEDMLWKELEVGLASIYFDDSEVSNANASAEAEEKLKEVCEHDNRLDEEIGIYCIRCGFVTTHIRDVNPIFVEKAVWRQDEKPCDGGEDKEEPTADEDDDFHFFPTDANPEEPISEENQSVWSLIPELKEKLHVHQKKAFEFLWQNIAGSSNPALIEAESKKRGGCVISHTPGAGKTFLIIAFLVSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWEIPIPVYLIHGRRTYRVFKQNSVAVLPGVPKPTDDVKHVLDCLEKIQKWHSHPSVLIMGYTSFLTLMREDSKFAHRKFMAKVLRESPQLLVLDEGHNPRSTKSRLRKCLMKVQTELRILLSGTLFQNNFCEYFNTLCLARPTFAYEVLKALDPKYKKKKKGVAGKGAEKAQYLIESRARKFFLDTIAKKIDSNVGDERLQGLNMLRNVTNGFIDVYEGGSSDDLPGLQIYTLLMNTTDIQHEILKKLHSDMAKCSGYPLELELLITLGSIHPWLVKTAVCSQKFLTKEQLSDLDKYKFDLKIGSKVRFVLSLIYRVVKNEKVLIFCHNIAPVKLFQEYFEKFFGWQKGREVLVLTGELELFERGKIMDKFEEPGSVSKILLASITACAEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKMVYVYQLLVTGSLEEDKYRRTTWKEWVSSMIFSEAFVEDPSRWQAEKIEDDILREMVEEDKSKSFHMIMKNEKASTNNR* 1301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2344 1300 MobiDBLite consensus disorder prediction 662 682 - -
Tpr4g2344 1300 Gene3D - 688 979 IPR038718 -
Tpr4g2344 1300 Gene3D - 1023 1300 IPR027417 -
Tpr4g2344 1300 SMART helicmild6 1129 1218 IPR001650 -
Tpr4g2344 1300 MobiDBLite consensus disorder prediction 405 430 - -
Tpr4g2344 1300 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1104 1265 IPR001650 -
Tpr4g2344 1300 Pfam SNF2-related domain 709 938 IPR000330 GO:0005524|GO:0140658
Tpr4g2344 1300 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1018 1281 IPR027417 -
Tpr4g2344 1300 CDD SF2_C_SNF 1093 1229 - -
Tpr4g2344 1300 Pfam Helicase conserved C-terminal domain 1101 1217 IPR001650 -
Tpr4g2344 1300 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 738 938 IPR014001 -
Tpr4g2344 1300 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 697 941 IPR027417 -
Tpr4g2344 1300 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 19 1297 IPR044567 GO:0080188
Tpr4g2344 1300 MobiDBLite consensus disorder prediction 405 427 - -
Tpr4g2344 1300 MobiDBLite consensus disorder prediction 265 279 - -
Tpr4g2344 1300 SMART ultradead3 709 944 IPR014001 -
Tpr4g2344 1300 MobiDBLite consensus disorder prediction 265 284 - -
Tpr4g2344 1300 CDD DEXHc_ATRX-like 713 939 - -
Tpr4g2344 1300 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2 19 1297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2344 Tpr-Chr4 24821845 24833867 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2344 1150 1236 RAD5 or RAD16-like Gene Family AT5G22750 41.379 1.44e-11 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Tpr4g2344 SNF2_N 1.9e-16 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2344 K10875 - gmx:100811703 1779.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g2344 4 24821845 24833867 Tpr4g2344 4 24821845 24833867 ECH
Tpr7g0994 7 9297920 9303314 Tpr4g2344 4 24821845 24833867 PCT