Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2343 ATGGGTGCTTCAGCTTATGATCAGAGTTATAATGTTAATCTTGCGCCATTGGAGTTGTCTAAGAAGAGGAAAATTAGGAGTAGAGGAAAAGGGCTTAAATCTGTGGCTGAGATTTTAGCTAAGTGGAGGGAATACAATGAGCGTCTCTATGCTGGTAAAGATGATGGTAAACCGAAGCGTAAAGCGCCGGCGAAAGGTTCAAAGAAAGGGTGTATGAAAGGGAAAGGAGGACCTCAAAACTCAGAGAATAAGTATAGAGGTGTTAGACAGAGGACTTGGGGGAAATGGGTTGGTGAAATTAGGGAACCAAATAGAGGTAGTAGGCTTTGGTTAGGTACTTTTCCTACTGCTCAAGAAGCTGCTCTTGCTTATGATTATGCTGCTAGAGCTATGTATGGTCCTTCCGCGCGACTTAACTTCCCGAATATATCAGATTATAGTTCTATTAAGGAATATTTGAAGGATTCTTCATCAGATGATGTTGCTGCTGCTCCTGCTGCTAGCTGTTGTTCTTCAGTGGTGACAACTCCTGCAACATCTGAGACAACAACTCTGTCAAGTCATTCTGAGGTTTGTGCTGTTGAGGATGTTAAGGAGATGTTTAAGATACCTGTCACTATGAACAATACTGTTGATGTTTGTTATGAAGTTTCGTCTCCAACTAGTAGAATTAAGCAAGAGCCAAAGGATGAGTTTGCTGATATCATTGACCCTAGTGGTGGTGAAATCCAAGATGCTAAATCAGAAGGAATACAAAAGCCAAAGGATGAGCTTGCTGATATCATTGACCCTGGTGGTGGTGAAATCCAAGATGCCAAATTAGAAGAAACACAGAAACATGATGTTGTGCAGATTGGAGATGGTGTATGTAATGACCAGATGGATTTTTCATGGATTGATAACTTTGACTTCGACTTTGACTTGGATTTTGACTTCAATGGTGATGATAACAAGAAGAATTGTTCAATGGATGAGTTCTTTCAAGCGGAGGAGCTTTTGGGGCAGTTAGACAATAATCCAGTTGATGAATCTGGGTTGATGCAAAGTTTGAATTGTGGACAAATGGGTTTTCCTGAAGAGAGTAATCCTCAGGTTGGGACTAGTCCAAGCTTCTTTTATGAATTGGAAAATCCAGATGCTATGCTGTTAGGGAGTTTACCTCATATAGAACATACAGACACAACATCAGGTGTTGATTATGCATTAGATTTCTTTAAAATAGAAGAACCTGTGAACTGTAATGGTTCTCTTGAAGATACACCATTTCTTGATTTGAATTTTGATGATGTGAATTATGATTCAAGAGGAATGTAA 1314 0.3965 MGASAYDQSYNVNLAPLELSKKRKIRSRGKGLKSVAEILAKWREYNERLYAGKDDGKPKRKAPAKGSKKGCMKGKGGPQNSENKYRGVRQRTWGKWVGEIREPNRGSRLWLGTFPTAQEAALAYDYAARAMYGPSARLNFPNISDYSSIKEYLKDSSSDDVAAAPAASCCSSVVTTPATSETTTLSSHSEVCAVEDVKEMFKIPVTMNNTVDVCYEVSSPTSRIKQEPKDEFADIIDPSGGEIQDAKSEGIQKPKDELADIIDPGGGEIQDAKLEETQKHDVVQIGDGVCNDQMDFSWIDNFDFDFDLDFDFNGDDNKKNCSMDEFFQAEELLGQLDNNPVDESGLMQSLNCGQMGFPEESNPQVGTSPSFFYELENPDAMLLGSLPHIEHTDTTSGVDYALDFFKIEEPVNCNGSLEDTPFLDLNFDDVNYDSRGM* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2343 437 MobiDBLite consensus disorder prediction 50 87 - -
Tpr4g2343 437 PRINTS Ethylene responsive element binding protein signature 85 96 IPR001471 GO:0003700|GO:0006355
Tpr4g2343 437 PRINTS Ethylene responsive element binding protein signature 107 123 IPR001471 GO:0003700|GO:0006355
Tpr4g2343 437 SMART rav1_2 84 147 IPR001471 GO:0003700|GO:0006355
Tpr4g2343 437 CDD AP2 84 142 IPR001471 GO:0003700|GO:0006355
Tpr4g2343 437 SUPERFAMILY DNA-binding domain 84 141 IPR016177 GO:0003677
Tpr4g2343 437 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 17 397 - -
Tpr4g2343 437 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 17 397 - -
Tpr4g2343 437 Gene3D AP2/ERF domain 83 142 IPR036955 GO:0003700|GO:0006355
Tpr4g2343 437 ProSiteProfiles AP2/ERF domain profile. 84 141 IPR001471 GO:0003700|GO:0006355
Tpr4g2343 437 Pfam AP2 domain 84 133 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2343 Tpr-Chr4 24813314 24815707 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2343 23 432 AP2-EREBP Transcription Factor Family AT2G40340 36.145 3.64e-58 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tpr4g2343 AP2 1.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2343 - K09286 mtr:MTR_5g083340 556.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g2343 4 24813314 24815707 Tpr4g2343 4 24813314 24815707 ECH