Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2330 ATGGAATCCTTGAATGCACGATGCTTCTATATTCAAGTTTTAATTTCTACCATTGCCACCTTTCTCTTAGTGGCTAGTGCCAGGGTGAATCATCACATTGTTGATCGTGATGGATACCCTTCATGGTTATCTACCAGTGATCGGATAGTAGTATCTCAGCTTCAGAGTGGAGGTATGCAACCAAATGCCATTGTGGCTAATGATGGCAGTGGCCAATATACCACGGTCACTGACGGCATCAACTCATACCCTACGAATTTCCAAGGTACATACATTATCTACGTTAAGGCCGGAATCTACCAAGAGTATGTGACCGTTGATCAGAGCAAACATAACATTCTCTTGTATGGCGATGGACCTACCAAAACCATAATCACCGGAAACAAGAACAAGAACCAAGGACTCTCAATGCCGGAAACTGCCACATTCACCACCTTTGCTGAAAATTTCACCGCCAAGTACATTAAAATTGAGAATACAGCGGATGCAACAGGTGAGCAAGCGGTAGCTATACGAGTTGTAGGTGATCGATCAGCGTTTTATAATTGTGCCTTTCGCAGTCATCAAGATACATTGTTTGTGGACAATGGCCGTCAGTTCTACCGTGACTGTGAGATTTCCGGAACGATTGACTTCATATATGGTCGTTCTAGTACTTTAATACAGAACTCTCAGATTTTGGTGAGAAAGCCCCTTGAAGGACAAAGCAATGTTGTGGTGGCTGATGGCACTTCTGCATACAGCAGGTTCACAACTGGTATAGTCTTGCAAAACTGCTCTATATTGCCAGATAATGAGTTCAAGCCTTATCTGCACACCACAAAAACTTACTTAGCAAGACCATGGGGTCAATTTTCAACCGCAGTTTTCCTTGAAAACTATATTGCTGATTTTATTCAAATGGATGGATATCTGATTTGGAGTAAAGATCAACCAAACATTGAAAACCCTTACTTTGCTGAGTTTGGCAACACTGGACCTGGTGCCAATGCCACAGCAAGAGTTAGTTGGGCTAAAGGTCTAATCAGCAAGAAGGCGGCTTCTATATTCACAGCGGAACAGTTCATTCATGCTAGAACTTGGTTGCCCGCCACCGGCATTCCCTATGATCATGGATTGAAATCAACTTAA 1131 0.4279 MESLNARCFYIQVLISTIATFLLVASARVNHHIVDRDGYPSWLSTSDRIVVSQLQSGGMQPNAIVANDGSGQYTTVTDGINSYPTNFQGTYIIYVKAGIYQEYVTVDQSKHNILLYGDGPTKTIITGNKNKNQGLSMPETATFTTFAENFTAKYIKIENTADATGEQAVAIRVVGDRSAFYNCAFRSHQDTLFVDNGRQFYRDCEISGTIDFIYGRSSTLIQNSQILVRKPLEGQSNVVVADGTSAYSRFTTGIVLQNCSILPDNEFKPYLHTTKTYLARPWGQFSTAVFLENYIADFIQMDGYLIWSKDQPNIENPYFAEFGNTGPGANATARVSWAKGLISKKAASIFTAEQFIHARTWLPATGIPYDHGLKST* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2330 376 Pfam Pectinesterase 62 358 IPR000070 GO:0030599|GO:0042545
Tpr4g2330 376 SUPERFAMILY Pectin lyase-like 59 372 IPR011050 -
Tpr4g2330 376 Gene3D - 56 373 IPR012334 -
Tpr4g2330 376 PANTHER PECTINESTERASE 15 373 - -
Tpr4g2330 376 PANTHER PECTINESTERASE 15 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2330 Tpr-Chr4 24666283 24667544 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2330 27 373 Carbohydrate Esterase AT2G47030 41.389 2.04e-93 289
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2330 K01051 - gmx:100808559 412.149