Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2321 ATGACCTCACAACTCATCAAAATTTGTAGCAAAAGAAAAGGCAATTACTTGCACCAAAGAGATAGAAAGAGAAAACACAAAAAAGAAAAAATTATGGTTTCTAGGGAGCAAAAGAGAGCAGCACTGCATGAGAAGCTGCAACTTCTTCGTTCTGTTACTAACTCTCATGCTCTAAATGATACCTCGATCGTAATCGATGCATCGAAGTATATCGAAAATCTAAAGGAAAAGGTTGAAAGATTGAATGAAGAAATAGCATCTGCAGAAAGTTCAAGTGTTCATAACCCATTGCCAATGGTTACGGTGGAAACCCTAGAAAAAGGATTTCTTATAAACGTTTTTTCAGCAAAAAGCAGTCAGGGTATGCTTGTTTCAATACTTGAAGCTATTGAAGAGATGAGACTTACGGTTCTAGAAGCTAGGGTTTCTTGTACAGACACTTTTCGATTCCAAGCTGTTGGAGGAGAGAATGAAGAACAAGGTGAGACTATTGATGCACAAGCTGTGAAACAAGCAGTGGGACAAGCAATAAAAAATTGGACTGAAAGTACCGATCAAGTGTAA 564 0.3777 MTSQLIKICSKRKGNYLHQRDRKRKHKKEKIMVSREQKRAALHEKLQLLRSVTNSHALNDTSIVIDASKYIENLKEKVERLNEEIASAESSSVHNPLPMVTVETLEKGFLINVFSAKSSQGMLVSILEAIEEMRLTVLEARVSCTDTFRFQAVGGENEEQGETIDAQAVKQAVGQAIKNWTESTDQV* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2321 187 Coils Coil 64 91 - -
Tpr4g2321 187 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 33 186 - -
Tpr4g2321 187 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 33 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2321 Tpr-Chr4 24554748 24558549 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2321 17 173 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 26.437 1.35e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2321 - - gmx:100306253 251.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g1823 6 19635007 19638129 Tpr4g2321 4 24554748 24558549 ECH
Tpr3g3639 3 40446040 40447923 Tpr4g2321 4 24554748 24558549 ECH
Tpr4g2321 4 24554748 24558549 Tpr4g2321 4 24554748 24558549 ECH