Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2298 ATGGGACCGAGTCTCGATGACCTCCTTTACTATTGTAGTGGCAAGTTTTCGCTAAAATCGGTTTTGATGTTGGCTGATCAGATGGTAATCATTCATTCATTTCATGACTTGTTACATATTTATAAAATTGAATCACTCACCGTGGATGATGTGAATAAAGATGGTGCAAAAGAAACTTTGGGAATGAAAGCAGTACAGACGATTTCAGAACGAATTGCAACACCTGTGTTTAGTGGGGATATACCAGATCCAGATGTTATCTGCCTTAAGGATTCTCTCGATGCTGTCCGGAATGCTACACAAGCTGCTGATAGAATACATCAAGTATATAGAATGCAATCATTTCAAAGAAAGCAGTTAGCTCAGTATGAAGGTGACGATGAGTTTGGATTGTCAGATCAGCAAGCTCTTTCGGTTCTTGCCTCTAAGGCATCCAAATCTGGTCATGGGGATGGTTCAGTCAATGCTGCTGCAATACAAATACAGAAAAAGTTCCGTGGCTGGACAAAGAGAAAAGAATTCCTGTTCATTCGTCAAAGAGTTGTTAAAATTCAGGCTCATGTAAGAGGTCACCAAGTAAGAAAGAAGTATAAATCAATTATCTGGTCTGTGGGCATCCTGGAGAAGGTTGTAATACGGTGGAGGCGCAAGGGCAGCGGTTTACGTGGATTTCGACCAGATGCTGTTATTAAGGCCCCCAACCAACCAAGCAACAATCCTGTGAAGGAGGATGATTATGATTTTCTCAAGGAAGGGAGGAAACAGAGTGAAGAAAGATTCCAAAAGGCTCTTTCAAGGGTTAAGTCCATGGTTCAGTATCCAGAGGCCCGGGCCCAGTACAGGAGACTGCTAAATGTAGTAGACGATTTCCGTCAAACCAAGGCATCTACTTCAAGTCCGATAAGTTCGGAAGGGGCAGTTGATGGTGTTGAGGATTTGATTGATATTGACATGCTTTTTGATGATGATAATTTCTTACCTATAGTATTCGATTGA 996 0.4167 MGPSLDDLLYYCSGKFSLKSVLMLADQMVIIHSFHDLLHIYKIESLTVDDVNKDGAKETLGMKAVQTISERIATPVFSGDIPDPDVICLKDSLDAVRNATQAADRIHQVYRMQSFQRKQLAQYEGDDEFGLSDQQALSVLASKASKSGHGDGSVNAAAIQIQKKFRGWTKRKEFLFIRQRVVKIQAHVRGHQVRKKYKSIIWSVGILEKVVIRWRRKGSGLRGFRPDAVIKAPNQPSNNPVKEDDYDFLKEGRKQSEERFQKALSRVKSMVQYPEARAQYRRLLNVVDDFRQTKASTSSPISSEGAVDGVEDLIDIDMLFDDDNFLPIVFD* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2298 331 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 40 331 - -
Tpr4g2298 331 Pfam IQ calmodulin-binding motif 179 198 IPR000048 GO:0005515
Tpr4g2298 331 Pfam IQ calmodulin-binding motif 156 174 IPR000048 GO:0005515
Tpr4g2298 331 SMART iq_5 153 175 IPR000048 GO:0005515
Tpr4g2298 331 SMART iq_5 176 198 IPR000048 GO:0005515
Tpr4g2298 331 Gene3D - 153 201 - -
Tpr4g2298 331 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 204 IPR027417 -
Tpr4g2298 331 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 1 40 331 - -
Tpr4g2298 331 ProSiteProfiles IQ motif profile. 177 201 IPR000048 GO:0005515
Tpr4g2298 331 ProSiteProfiles IQ motif profile. 155 183 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2298 Tpr-Chr4 24276618 24282840 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2298 43 301 CAMTA Transcription Factor Family AT5G64220 64.479 1.63e-112 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2298 K21596 - gmx:100818124 430.639