Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2290 ATGGGAACTCTTTCCCTTCATCCCAATCTCAACCTATTCTTTCTCTTCCACCCCCCTTCCACACACAAAAACCCTAATTTCTTCCACCAAAACCCTAATTTCTCACCTTCTTCCCTTTCTCTCAAATCTTCAATCTTCCACTGTTCAAAATCCAACCACATTCCCGCTATTTCTCAATCAACTCCAACTCGCATCAAACGCGTCTCTAGAGCCACTAAAATCAAAGCACAACGTGCCCTACTTGATTACCTTCTCTACACTCGAAATTACGCTTTCCCAGACGCAGAATTCATCTCAAAAAACTCTCCACATTTCATCCATTATCTTATCTCCAAGATCAACATTCAAGACGGCGACGTTTTTCGCTCTCTGAGGAGGTATCTTATGTATAACCCTATTAACGAATTTGAACCATTTTTAGAGAGTTTAGGTATTAAACAAAGGGAATTGCAATTATTTTTGCCTAAAGGCTTGTTTTTTCTTATTGATGATAGTGTTTTGGTTGATAATTTTCATGTATTGTATAATCATGGGGTTCCGAGGAATAGAATAGGGAAAATTTATAAAGAAGCAAGAGAGGTTTTTCGGTACGGTAGTGGTGTTTTGGCAAAGAAATTCAAAAATTACGAAGATTTGGGTTTGAGTAAATCTTCTATTGTCAAGCTTGTTATTTGTTGTCCATTGCTTTTGGTTGGTGATGTTGATCCTGAGTTTGTTGCTGTTCTTGATTGGTTGAAGAAAATTGGGATTGAGAGTCAATGGATTGTGTGCTGTATGTCTTGTATAAGAAAGTTTAGTTGGAAAAAAATGATCGACACTATAAAGTTTGTTCATGAAGTTGGATATTCTGAGAAACAAATGTATGATTTGTTTAAAGCGGACCCTAGATTGTTGTTGGAAGGTTCAGGGAAGAAGATGTACTTGTTTTTGGGTCGGTTGATTAAGTCTGGTGTTGATGTGAATGTGGTTCGTTCTTGTTTTGCAGAGCATCCCGATTTGTTGTCAAGGAAGAGTGTGAACAATTTGATTGCCGTGATTGCTTTTTTGTATAATATTCGAATGGAACAAGATGATATGGAGCATGTTTTGACTAACTACATGCATATCCTGAGCAAACATTCGATAAAAGGTCATATAACTGTTTGTAAGGAGTTAAGAGTTGGAAAAGCTGATTTATGCCGAATCATAAAGGATGATCCATTAGAGCTTATTAGTTTGGCTTCAAAATTGGAACAGATTAGAGTTGGAAGGGAACACTATTATGACCCACGTAATTATTTGGATAAAACAACTTTCTTGCTGAAATTGAACTATATTGAGAATTCTGAGGAGATGGAAGAAGCAATGGAGATATTTAAAGGGAGAGGTGATCGGTTACAAGAGAGATTTGATTGCCTGGTAGAAGCTGGTTTGGATTATAACAGCGTGGTTAGAATGATAAGGCAAGATCCTAGGATTCTAAACCTGAAGAAAACTTTACTTCAAAAGAAGCTTGACTTCATAAAAAACACTTCAGGTTTCCCAATAGAATGTGTTGTGGGATACCCATATTACTTTTCTCGTGATTTGGGCAGAGTTAGTGCAAGATTTTCAATGTATCAGTGGTTGAAGAAGAGGAATGCAATCGATCCTGTTAAATCCTTCCGCAACATAGTTTCAATTAACGAAAATAATTTTGTAAAATACTTTGTGAATATGCATCCAGAAGGTCCAACAGTCTGGGAGAGTATAAAAAGTTTATCAAACAAATATTGGAATTAA 1761 0.3646 MGTLSLHPNLNLFFLFHPPSTHKNPNFFHQNPNFSPSSLSLKSSIFHCSKSNHIPAISQSTPTRIKRVSRATKIKAQRALLDYLLYTRNYAFPDAEFISKNSPHFIHYLISKINIQDGDVFRSLRRYLMYNPINEFEPFLESLGIKQRELQLFLPKGLFFLIDDSVLVDNFHVLYNHGVPRNRIGKIYKEAREVFRYGSGVLAKKFKNYEDLGLSKSSIVKLVICCPLLLVGDVDPEFVAVLDWLKKIGIESQWIVCCMSCIRKFSWKKMIDTIKFVHEVGYSEKQMYDLFKADPRLLLEGSGKKMYLFLGRLIKSGVDVNVVRSCFAEHPDLLSRKSVNNLIAVIAFLYNIRMEQDDMEHVLTNYMHILSKHSIKGHITVCKELRVGKADLCRIIKDDPLELISLASKLEQIRVGREHYYDPRNYLDKTTFLLKLNYIENSEEMEEAMEIFKGRGDRLQERFDCLVEAGLDYNSVVRMIRQDPRILNLKKTLLQKKLDFIKNTSGFPIECVVGYPYYFSRDLGRVSARFSMYQWLKKRNAIDPVKSFRNIVSINENNFVKYFVNMHPEGPTVWESIKSLSNKYWN* 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2290 586 SMART mt_12 442 472 IPR003690 GO:0003690|GO:0006355
Tpr4g2290 586 SMART mt_12 509 540 IPR003690 GO:0003690|GO:0006355
Tpr4g2290 586 SMART mt_12 185 215 IPR003690 GO:0003690|GO:0006355
Tpr4g2290 586 SMART mt_12 220 251 IPR003690 GO:0003690|GO:0006355
Tpr4g2290 586 SMART mt_12 477 508 IPR003690 GO:0003690|GO:0006355
Tpr4g2290 586 SMART mt_12 324 355 IPR003690 GO:0003690|GO:0006355
Tpr4g2290 586 PANTHER CGI-12 PROTEIN-RELATED 47 578 IPR003690 GO:0003690|GO:0006355
Tpr4g2290 586 Pfam mTERF 65 235 IPR003690 GO:0003690|GO:0006355
Tpr4g2290 586 Pfam mTERF 459 559 IPR003690 GO:0003690|GO:0006355
Tpr4g2290 586 Pfam mTERF 275 454 IPR003690 GO:0003690|GO:0006355
Tpr4g2290 586 Gene3D Transcription termination factor 3, mitochondrial 158 307 IPR038538 -
Tpr4g2290 586 Gene3D Transcription termination factor 3, mitochondrial 308 575 IPR038538 -
Tpr4g2290 586 PANTHER MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 47 578 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2290 Tpr-Chr4 24181778 24185926 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Tpr4g2290 mTERF 3.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2290 - - gmx:100803162 644.425