Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2286 ATGTCGGACGAGGAACACCACTTCGATTCAGTTGCCGATGCCGGAGCCTCCAAAACCTACCCTCAGCAGGCCGGTACCATCCGCAAAAACGGTTACATCGTCATCAAGGGCAGACCTTACAAGGTTGTTGAAGTTTCTATTTCAAAAACAGGAAAGCATGGACATGCAAAGTGTCACTTTGTTGCAATTGATATCTTCAACGGCAAAAAGCTTGAAGATATTGTTCCTTCATCTCACAATTGTGATGTTCCTCATGTGAATCGTACTGATTATCAGCTGATTGATATCTCTGAAGATGGTTTTGTGAGTCTGTTGACTGATAACGGAAGTACCAAGGATGATCTGAAACTTCCCACTGATGATAGTCTGCTTACTCAGATTAAAGATGGATTTGCTGAAGGAAAAGATCTTGTGGTTTCTGTCATGTCTGCAATGGGAGAAGAACATATATGTGCCCTGGAGGACATTGGTCCTAAAAATTAA 483 0.4224 MSDEEHHFDSVADAGASKTYPQQAGTIRKNGYIVIKGRPYKVVEVSISKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGSTKDDLKLPTDDSLLTQIKDGFAEGKDLVVSVMSAMGEEHICALEDIGPKN* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2286 160 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Tpr4g2286 160 Gene3D - 1 85 IPR014722 -
Tpr4g2286 160 Gene3D - 86 158 IPR012340 -
Tpr4g2286 160 PIRSF Transl_init_eIF5A 1 157 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Tpr4g2286 160 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 155 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Tpr4g2286 160 PANTHER BNAA07G09420D PROTEIN 1 155 - -
Tpr4g2286 160 SMART eIF_5a_2 85 154 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Tpr4g2286 160 SUPERFAMILY Nucleic acid-binding proteins 86 154 IPR012340 -
Tpr4g2286 160 TIGRFAM eIF_5A: translation elongation factor IF5A 17 152 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Tpr4g2286 160 CDD S1_eIF5A 86 152 - -
Tpr4g2286 160 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 85 152 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Tpr4g2286 160 SUPERFAMILY Translation proteins SH3-like domain 15 93 IPR008991 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2286 Tpr-Chr4 24134178 24134702 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2286 1 159 Eukaryotic Initiation Factors Gene Family AT1G13950 88.679 8.45e-101 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2286 K03263 - cpap:110811212 307.76