Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2281 ATGAATGAAAATCTGGTTAAAAAAAAACCGGAAAAAACAAGAGTGTTTATCAGAATCGAAATGGAAAATTCAGACAACGACGAACCGGAGAAGAAGAGACTTCATCTTCTCACACCTGTTTCTTCCCGCGTTTCACGAAATTCAACAAACCATTCTCCTAATAGCAAAACTGCTGATGCGGGTGTCTTACAGCTCCAGAATCAGCAGCTTGTTCAGGAGACAGAAATCCAGAAACAGGCTTTACACGAAATTGAAGATAAAACTAGAGAATTGAAAGAAAGACAAAAGGCTTATGATGACATATTAATCACATTCAACCAACACTGGGATCAGTTAGTTGATGATATGGCTCTTCTCGGGATACAAGCTGGGAGAGGCAAAGATTCTTTGCAAACTTTGGATTACCTTGATAATCCTCAAGGTTCACTTCCTTCGTGTCCTCCGGATGATCTATTTCTCTGTAGATTAATCCAGAAAGATTGTATTGAAGGAAGAAGTAATAATGAGATAATTAATTATGTTGAGGAAGCCCTTGCTTTGCGTCGGTTATCTACTACGGAGTTGTTGAAACTCATCCAAGATACCGTTGATGATCAGATGGAAAGAATTGAGGATATAGGTCAGGTTTTACACGGAGATTTATCTACCGAAGATGCTGTCATCCAAATGTCTAAGATTGACAATATGACGAAAAAGGAGGTAGACAATTTTCATGAAGTGATTGATACTCTCCATGCAAAACACAAAGAGTATACTGTTGGTATTCAGAATTATATAGAAGAGTGCTTAAGAGATCAATCTGTCATAAAAAGCCTTACAGGAGAGCTTGACGAGATCGTGGCTGAACTTGAAGAGAGTAGAAGAAAACTAGTCAGTCTGAAAATGCAAAAAGATGCAGCCATGGGAATGAATTCCTCCAATGCAGATGCAGTGAATGGAAACTTGTCTCCGGAGAAGCCTGCAGACAGGGCTATGGGTTTGTCTGAGTTGAAGAATTCAATTGAGGAAGCCAAGATAGTGGATGCTGATCGTCTTTCTGAGCTTCAAGATTCACGGGAAAGAAATCAAATCTTGACTAAGCAATTCCAAGAACTCCAGAATGAATTGAATGATGATAAGTATGTACGCTCTTCCCGAATATACTCTTTGGCAAATGATCAACTTCAACATTGGATTGCTGAATTGGATCGATATAAGTCATTGGCGGAGTCTCTGCAGGCTGGAAGGGCTAATGTCATAAAACGGGAGAAGGAACTGAAGCTGAAATTGGAGTCTACTGATAATGCAAGGCATATTCTTGACAGTTCTGACTCGGGGACTGATGAGCTCGAGCTTCAGTTGCAGAAATGTATTATTGAACGAAATGATCTGGAACTTACATTGGAAGAGGCCAAACAGGATACTGGGAGAAAAGATATCAAAGTTGAGTTTCGTGTGATGGCCTCAGCTTTATCTAAAGAAATGGGGATGATGGAAGCGCAATTGAAGCGATGGAAGGATGTAGCTCTTGAAGCTGTATCATTGCGTGACAAAGCACATTCACTTAGAGCAACATTGAGTGGCAAGACAAGCGATCTCAAGAACCTTGCAAACAAATGTGCTGAGCAGGTTTTGGAAATTAAGTCTTCAAAAGCATTGATTGGAAAGTTACAGCAGGAGAATCAGGAGTTAGAATTTGTTTTGGGTATGTATGGCTCGGAGGATTATCAGAAAAGCTTGCCAGAAGTTAGAGAATCTGAAAGTAAAGCTCGCTCTCAAGCTGAAATGTTGAAAAATGCTTATGATGAACATGGTCTAGAGTTGAGAATAAGAGCTGCTAATGAAGCTGAAGCTGCCTGTGAACAAAGGCTTTCTGCTGCAGAAGCTGAAATAGAAGAGTTAAAGGCCCAGCTTGATAAAACGGAAAGAAACAAATTGGAGATGACTGAGGCTATTAAAGTTAAAGAGGCTGAGGCAGAGATCTATATCTCTGAAATTGAGACTATTGGTCAAGCATATGAAGATATGCAGACACAGCACCAACATCTGTTGCAGCAGGTGGCTGAGAGGGATGACTTTAATCTTAAGCTTGTATCAGAAAGCGTGAAGGCAAAACAATTACATAGCTCATTACTGTCTGAAAAGCAAGCCTTAGCAGATCAACTTAAACAGATTAATTCTTTGATAGAAAATTCAAAGGCGAAGATTGCAAGTAGTGAACAACAGATTGAACGTATTCTATCAGAAGCTGCGAAATGTACTCAGGATGAAAAACACCTTGCAGCCGCCTTAGAGTTTACCAAGTGGGAATTGGCTGATGCTGAGAAGGAGTTGAGGTTGCTCAAGTCTGTTGCTTCATCTTCAGAGAAAGAATACGACCAAATTCAGAAAGATATTGAAGCTATTGAAAAGGAATTGGATAGTGAAAGGAATTCACGGAAGAAGCTTGAGGAAGAACTAATGGAAGTGAACAGCCAAATTGCTGAGCTGAAGGCTGAAACTGGAGAAACCGCAGTACAACAACTTGAAGAAGAAATAAGAGTTTGCAAGAACATGATCAAGTGTACTGTCTGTTCTGACCGCCCAAAGGAGGTTGTGATTGTGAAGTGCTATCATCTGTTCTGCAATCCATGCATACAAAGAAATCTTGAGCTCCGTCACCGCAAATGTCCTGCCTGTGGAACAGCATTTGGACAGAGCGATGTTCGTTTTGTTAAAATATGA 2703 0.4025 MNENLVKKKPEKTRVFIRIEMENSDNDEPEKKRLHLLTPVSSRVSRNSTNHSPNSKTADAGVLQLQNQQLVQETEIQKQALHEIEDKTRELKERQKAYDDILITFNQHWDQLVDDMALLGIQAGRGKDSLQTLDYLDNPQGSLPSCPPDDLFLCRLIQKDCIEGRSNNEIINYVEEALALRRLSTTELLKLIQDTVDDQMERIEDIGQVLHGDLSTEDAVIQMSKIDNMTKKEVDNFHEVIDTLHAKHKEYTVGIQNYIEECLRDQSVIKSLTGELDEIVAELEESRRKLVSLKMQKDAAMGMNSSNADAVNGNLSPEKPADRAMGLSELKNSIEEAKIVDADRLSELQDSRERNQILTKQFQELQNELNDDKYVRSSRIYSLANDQLQHWIAELDRYKSLAESLQAGRANVIKREKELKLKLESTDNARHILDSSDSGTDELELQLQKCIIERNDLELTLEEAKQDTGRKDIKVEFRVMASALSKEMGMMEAQLKRWKDVALEAVSLRDKAHSLRATLSGKTSDLKNLANKCAEQVLEIKSSKALIGKLQQENQELEFVLGMYGSEDYQKSLPEVRESESKARSQAEMLKNAYDEHGLELRIRAANEAEAACEQRLSAAEAEIEELKAQLDKTERNKLEMTEAIKVKEAEAEIYISEIETIGQAYEDMQTQHQHLLQQVAERDDFNLKLVSESVKAKQLHSSLLSEKQALADQLKQINSLIENSKAKIASSEQQIERILSEAAKCTQDEKHLAAALEFTKWELADAEKELRLLKSVASSSEKEYDQIQKDIEAIEKELDSERNSRKKLEEELMEVNSQIAELKAETGETAVQQLEEEIRVCKNMIKCTVCSDRPKEVVIVKCYHLFCNPCIQRNLELRHRKCPACGTAFGQSDVRFVKI* 901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2281 900 SUPERFAMILY RING/U-box 847 891 - -
Tpr4g2281 900 Coils Coil 447 467 - -
Tpr4g2281 900 Coils Coil 269 296 - -
Tpr4g2281 900 ProSitePatterns Zinc finger RING-type signature. 863 872 IPR017907 -
Tpr4g2281 900 MobiDBLite consensus disorder prediction 39 59 - -
Tpr4g2281 900 SMART ring_2 848 886 IPR001841 -
Tpr4g2281 900 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BRE1 42 900 - -
Tpr4g2281 900 MobiDBLite consensus disorder prediction 40 59 - -
Tpr4g2281 900 CDD RING-HC_BRE1_like 846 887 - -
Tpr4g2281 900 Coils Coil 67 87 - -
Tpr4g2281 900 PANTHER RING FINGER PROTEIN-RELATED 42 900 IPR013956 GO:0004842|GO:0010390
Tpr4g2281 900 Coils Coil 603 651 - -
Tpr4g2281 900 ProSiteProfiles Zinc finger RING-type profile. 848 886 IPR001841 -
Tpr4g2281 900 Coils Coil 757 838 - -
Tpr4g2281 900 SUPERFAMILY Tropomyosin 706 849 - -
Tpr4g2281 900 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 829 899 IPR013083 -
Tpr4g2281 900 Coils Coil 348 368 - -
Tpr4g2281 900 Pfam Zinc finger, C3HC4 type (RING finger) 847 889 - -
Tpr4g2281 900 Coils Coil 708 749 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2281 Tpr-Chr4 24078026 24095533 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2281 821 895 RAD5 or RAD16-like Gene Family AT5G05130 26.190 2.09e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2281 K10696 - gmx:100796610 1262.28