Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2280 ATGGCAGGAATGCTTCCAGGAGTTGAATCTGCTAGAAGGAGACATGTCCATAAAGGAGGTGGATTTTCTGATTCACCATCTTTGACTTCTCATAACACCTCAAGACGCTCTGGTTTCTGTTTGTATGCAAGTAACCATGAATCTCGTCCTTCCTCTTTGTCTTCCTCTTCAATGCAAAGAAATACAATATTTTATCAGACACACCAAGATGAGAATATGGTTGGAGCAGCTAGAGAAGCCAAACAGAGATTAGATGACAAATTCAGATCACAAAGGGTATCAGAAAACACAAGTACTAGGCAAAATAACATAAAGTGTGTGGAGGGTAGAAAAGAAAGCATAGAAGAGTTACAAATTGAGGTATGTGGATCAAGGAAAAGTGGTCCAAGGAAGTTCAGTTGGAGCAAATTGAGCTGGAAAACATCAGAAGAAGATGATTGTGCTGTGTGTTTGGAATCATTTAAGATTGGTGAGAAATTGATTCCTCTCCCTTGTGCACACAAATTCCATTCCAAATGTTTGAAACCTTGGTTACAAAATAATTCACACTGTCCATGCTGTAGAACTACCATTCTTTCCCTCTAG 585 0.3915 MAGMLPGVESARRRHVHKGGGFSDSPSLTSHNTSRRSGFCLYASNHESRPSSLSSSSMQRNTIFYQTHQDENMVGAAREAKQRLDDKFRSQRVSENTSTRQNNIKCVEGRKESIEELQIEVCGSRKSGPRKFSWSKLSWKTSEEDDCAVCLESFKIGEKLIPLPCAHKFHSKCLKPWLQNNSHCPCCRTTILSL* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2280 194 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 127 193 IPR013083 -
Tpr4g2280 194 Pfam Ring finger domain 145 188 IPR001841 -
Tpr4g2280 194 CDD RING-H2_PA-TM-RING 146 188 - -
Tpr4g2280 194 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 190 - -
Tpr4g2280 194 SUPERFAMILY RING/U-box 136 192 - -
Tpr4g2280 194 SMART ring_2 147 187 IPR001841 -
Tpr4g2280 194 MobiDBLite consensus disorder prediction 1 34 - -
Tpr4g2280 194 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 1 190 - -
Tpr4g2280 194 ProSiteProfiles Zinc finger RING-type profile. 147 188 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2280 Tpr-Chr4 24074820 24076011 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2280 1 89 C3H Transcription Factor Family AT2G15580 43.000 3.49e-16 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2280 - - gmx:100527583 248.825