Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2279 ATGGCTCGCCAGAGGTTAACGCGAGAACCACGATTGCCACTGCCAAGACTGGTGCTTCGAGCACCGATTCCCGCTCCGGCGAACGTAAATCAAGCTCCGGAGGAGGAGAACGTTGTTCTCATTCCGCCGCACGTAAATCCAACTCCGGACACGGAAATCCGGTACAGAGGCGTTCGGAAGCGACCGTGGGGACGGTACGCTGCGGAAATCCGAGATCCCTCAAAAAAGGCCAGGGTCTGGTTAGGAACCTTTAACACCGCTTTAGAAGCGGCTAGAGCTTATGATGATAAAGCTATTATGTTCCGCGGAGCGAAGGCAAAGACCAATTTTCCAATTCCGGAACATATCTTGGCTGCTGCTGAGATTCCTGCTGCCGCTGCTCCTGCTGCTCATCGGGTTAATGATAGAATTGAGCTTTTGAATTTTGAGATTCCGGTGAATAGGCCGACTTCGAGCGGAATGAGCAGTACGGTTGAGTCATTCAGCGGACCTAGGGCTGTTGTTGTTGGTTCGTCGTCAACAACAGCTGTTTCTAGGGTCCCTGTTGGTCCGGATCATAGTGATTGTGATTCGTCTTCATCCGTTGTTGATGATGATGATGATGAAGATTGCGTTGTTGTTGCTTCTTCATCATCATCAGTCAAGAAGCCACTGGAGATCGATCTGAATTTCCCTGCGCCAATGAATGATGAAGAGATCCGTGCTACGGCCTTGCATCTTTGA 723 0.5048 MARQRLTREPRLPLPRLVLRAPIPAPANVNQAPEEENVVLIPPHVNPTPDTEIRYRGVRKRPWGRYAAEIRDPSKKARVWLGTFNTALEAARAYDDKAIMFRGAKAKTNFPIPEHILAAAEIPAAAAPAAHRVNDRIELLNFEIPVNRPTSSGMSSTVESFSGPRAVVVGSSSTTAVSRVPVGPDHSDCDSSSSVVDDDDDEDCVVVASSSSSVKKPLEIDLNFPAPMNDEEIRATALHL* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2279 240 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3 51 208 - -
Tpr4g2279 240 MobiDBLite consensus disorder prediction 174 201 - -
Tpr4g2279 240 CDD AP2 54 112 IPR001471 GO:0003700|GO:0006355
Tpr4g2279 240 ProSiteProfiles AP2/ERF domain profile. 54 111 IPR001471 GO:0003700|GO:0006355
Tpr4g2279 240 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 51 208 - -
Tpr4g2279 240 Pfam AP2 domain 54 102 IPR001471 GO:0003700|GO:0006355
Tpr4g2279 240 Gene3D AP2/ERF domain 53 112 IPR036955 GO:0003700|GO:0006355
Tpr4g2279 240 SMART rav1_2 54 117 IPR001471 GO:0003700|GO:0006355
Tpr4g2279 240 PRINTS Ethylene responsive element binding protein signature 55 66 IPR001471 GO:0003700|GO:0006355
Tpr4g2279 240 PRINTS Ethylene responsive element binding protein signature 77 93 IPR001471 GO:0003700|GO:0006355
Tpr4g2279 240 SUPERFAMILY DNA-binding domain 54 112 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2279 Tpr-Chr4 24067781 24069073 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2279 52 181 AP2-EREBP Transcription Factor Family AT1G50640 53.571 8.89e-33 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tpr4g2279 AP2 8.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2279 K09286 - twl:120001102 141.354
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g2279 4 24067781 24069073 Tpr4g2279 4 24067781 24069073 ECH