Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2273 ATGCAACAACAAGTGGCATCAAAAGTTCAACATACCCAGTTGAAGAAAAAGAATCAAGAAACACAGATGTGTAGGAAAATCAAACTCAGTATTTCTGATCATAACAACAACCTCAAAAACACAACAACCGTTGATGATATTGATGTTTGTGACAAAATAGACGGCGAGGATCTCTTCATTCCACCTCTCAATTTTGCTATGGTTGATAATGGCATTTTCCGTTCTGGTTTTCCTGAACCTTCCAACTTCTATTTCCTTCAAACCCTTGGCCTTCGCTCCATCATATATTTGTGTCCTGAACCATATCCAGAAGCTAACATGGAGTTTCTCAAGTCAAATGGGATCAAGCTTTATCACTTTGGAATTGAGGGTCATAAGGAGCCATTTGTAAACATTCCAGAAGACACAATCCGGGAAGCGCTAAAAGTTCTTCTTGATGTAAGGAACCATCCAGTTATAATTCACTGTAAGCGAGGAAAGCACCGAACAGGTTGTTTAGTCGGATGCTATAGAAAACTACAAAAATGGTGCTTGTCATCTGTTTTCGATGAGTACCAGCGCTTTGCAGCTGCAAAAGCTCGAGTTTCAGATCAGAGGTTTGTAGAATTGTTTGATATTTCAAGCTTGAAGCATTTGCCTATACCATTTTCATATTTGAAGCGGTAA 666 0.3904 MQQQVASKVQHTQLKKKNQETQMCRKIKLSISDHNNNLKNTTTVDDIDVCDKIDGEDLFIPPLNFAMVDNGIFRSGFPEPSNFYFLQTLGLRSIIYLCPEPYPEANMEFLKSNGIKLYHFGIEGHKEPFVNIPEDTIREALKVLLDVRNHPVIIHCKRGKHRTGCLVGCYRKLQKWCLSSVFDEYQRFAAAKARVSDQRFVELFDISSLKHLPIPFSYLKR* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2273 221 ProSitePatterns Tyrosine specific protein phosphatases active site. 154 164 IPR016130 GO:0016311|GO:0016791
Tpr4g2273 221 Pfam Tyrosine phosphatase family 60 211 IPR004861 -
Tpr4g2273 221 Gene3D Protein tyrosine phosphatase superfamily 58 208 IPR029021 -
Tpr4g2273 221 PANTHER TYROSINE-PROTEIN PHOSPHATASE DSP1 17 218 - -
Tpr4g2273 221 CDD PFA-DSP_Siw14 58 205 - -
Tpr4g2273 221 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 60 206 IPR029021 -
Tpr4g2273 221 ProSiteProfiles Dual specificity protein phosphatase domain profile. 64 218 IPR020422 GO:0006470|GO:0008138
Tpr4g2273 221 PANTHER TYROSINE-PROTEIN PHOSPHATASE 17 218 - -
Tpr4g2273 221 PRINTS Plant and fungal dual specificity phosphatase signature 59 76 IPR020428 GO:0016791
Tpr4g2273 221 PRINTS Plant and fungal dual specificity phosphatase signature 96 109 IPR020428 GO:0016791
Tpr4g2273 221 PRINTS Plant and fungal dual specificity phosphatase signature 115 129 IPR020428 GO:0016791
Tpr4g2273 221 PRINTS Plant and fungal dual specificity phosphatase signature 132 146 IPR020428 GO:0016791
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2273 Tpr-Chr4 23868091 23872063 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2273 55 221 Protein tyrosine phosphatase (PTP) family AT4G03960 76.647 2.26e-97 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2273 K18045 - gmx:100814279 360.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g2273 4 23868091 23872063 Tpr4g2273 4 23868091 23872063 ECH