Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2254 ATGGATCCAAAACTCTTCTTTCTTTTCTCACTTAGGAGTCGTGCGAGACAATTCGTAATTGAGCACTCTACCTACACCTTAAACATAATGTCCACAAAGCTTCTGTCTTTTCATTTTATTCTCATCATGTTTTTCAATTCACTTTTATGGCTTTCTACCCTCCAAGTTTATGGCATTTTCACTTTTGCTGCCACTAATGCTACAAAAGTTCAAGGTAGTGAAGCAATTGCTCTATTAAATTGGAAAACTAACCTTGACAAACAAAGCCAAGCTTCATTGTCTACTTGGTCCATCATTTCAAGTCCTTGCAATTGGAAGGGGATTGTTTGTGATGAAAAAACCAATTATGTGACAATTATAAATCTTGCAAACTTTGGTCTTAAAGGTACTCTTTTAAGTCTCAACTTCTCATCCTTTCCTATGCTTCAAACTTTGCATATAAGTTACAACTTCTTTCATGGTACTATTCCACATCAAATTGGTAACTTGCCCAAAATTTCTAAACTAAAAATGAGTCATAATCTTTTCAATGGTTCCATTCCACAAGAAATAGGGACACTAAGGAATCTAAGTTACCTTCATATTGCAATATGTAAACTTATTGGTTCCATTCCCTCAACAATTGGAATGTTGATAAATCTTGTTGAACTTGATTTATCAGCTAATTATCTCTCCGGCAAAATTCCTTCCATAAAAAACTTGATGAACTTACAACAACTTGTTCTATACGGAAATTCTCTTTCTGGACCGATTCCTATGGATTTAGGCACAATCTCTTCTGTTAGAACAATTAAATTGTTAAGCAACAAATTTTCTGGTGAAATTCCATCCTCCATAGGAAACTTGAATAATTTGAGGAAACTTCAGCTTAGTTATAATCAACTTTATGGATCAATTCCTTCTACTATAGGAAACTTGACAAAACTCATTCAATTATCACTTTCTCAAAACCAAATTTCTGGATCAATTCCATCTTCATTAGGAAACTTGATCAATCTAGAAATGCTCAGTCTTTCAGAAAATCATCTTTCTGGTCCTATTCCTTCAACCTTTGGAAATTTGACCAAACTAACCTTTCTATTACTTCACATGAACAAACTTAATGGTAGCATTTCACAAGCAATGAAAAACATTACCAATTTGAAAAGCTTACAATTAAGTTCAAATGATTTCATTGGCCAATTGCCACATCAAATTTGCCTTGGTGGATCACTAAGAAACTTTTCTGCTAATGAGAATCATTTTAGTGGTTTAGTTCCGATAACCTTGAAGAATTGTTCAAGCCTTGTTAGACTCAACCTTGCAGATAATATGTTAGTTGGAAATATTTCAGATGATTTTGGTGTATATCCAAATTTGAGCTACATTGATTTGAGTCACAACTACTTTCATGGCAAAATTTTGCAAAGTTGGAGGAAAAGTCATAATCTAATTGGCCTAAGGATCTCAAATAACAATTTATCAGGTACTATACCTCCAGAACTAGGACAAGCCCCTAAGTTACAATCACTTCAACTTTCTTCAAATCACTTAACAGGAAAAATTCCTAAAGAGCTTTGTAACTTGACTTCATTGTATGAACTCTCCATTAGTAACAATGAACTTTATGGAAAAATTCCTAAAGAAATAGGATTCATGCAAGGACTTGGAAACTTGAATCTTGCAGAAAATAGTTTAAGTGGCTCAATTCCAAAACAAATTGGAAAGCTTCTCAAACTAGTTCATTTGAATTTGAGCAATAATAAGTTCATGGAAGGAATTCCACATGAATTTAACAGATTGCAATCTCTTGAAGATCTTGATCTTGGTGGAAATTTGTTAAGTGGACAAATACCTGAAGATATTGGAAAGTTGCAAAAGTTGAACACATTGAACCTTTCTCACAATAATCTCTCTGGAAATATTCCATCTAATTTTAAAGATATGATTAGCTTGACAAATGTTAGCATATCTTATAACCAATTAGAGGGTCCAATTCCAAACAATCAAGTGTTTTCTAAGGCACCTTTTGAAGCATTGAGAAACAATAAAGGCTTGTGTGGTAATTCTTCAAGCTTGTTTCCTTGTGTGGTAAGTCATCACAATACAAAAAGTAAACACAAAAGTGTGATGATATTGATACTCTTTCTATTTCTTATAGTCTTCTTGGTTGGTGGTTCTTTGTATATTCATTGGAAAAAGGCAAGAAAACTTAAAAAGCAAGCTAGAGAAGAACAAGAACAAAAACAAATTGAAGATGTTTTTTCCATATGGAGTTATGATGGAAAAATGGTTTATGAAAATATCATTGAAGCCACAGAGGATTTTGATGAGAAATATCTCATTGGTGAAGGAGGTTCTGGTTTGGTTTACAAGGCTAATTTAGCATCTGGTCAAGTTGTTGCTGTGAAAAAACTTCATGCTGAAGTTGAGAGTGAAATGAACAATTTCACGGCTTTTACTAATGAGGTTAAAGCGTTGACGCAAATCAAACATCGTAACATTGTGAAGTTGTATGGATTTTGTTCGCATCCGCGCCACTCTTTTGTGGTTTATGAGTTCTTAGAAGGAGGGAGTTTGGATAATGTGATGAGACTTGATACACAAGCAACAACATTTGATTGGAAAAAGAGAGTGAATGTTGTTAAGGGTGTGACAAATGCTCTTTACCATATGCATCATGGTTGCTCTCCTCCTATTGTTCATCGTGACATATCGAGCAAAAATGTTCTTTTAGATTTGGATTGTGAAGCTTACATCTCAGACTTTGGAACTGCTAAGATTCTTAATCTTGATTCACATAATTCAACAACATTTGCAGGCACTTATGGATATGCAGCACCAGAGCTTGCATATACTCATGAAGTGAATGAGAAATGTGATGTGTTTAGTTTTGGAGTGCTATGTTTGGAAATAATTATAGGAAAGCATCCTGGGGATCTGATTTCTACATTTTTTTCATCATCTGAAGCACCAAAAGCATATAATTTACTATTGAAAGATGTATTAGACCAAAGACTTCCTCTTCCAGAAAATTCAGTTGCTAAGGATGTGATCTTGATTGCAAAAATGGGATTTGCTTGCTTGAGTGACAATCCACATTCTAGACCAACTATGAAACAAGTTTATAACATGTTTGTGATGCCAAAATCACCATCAATGGAGACATTCCGCATCGTCACACTTGGTCAACTTTTAAATTAG 3183 0.3409 MDPKLFFLFSLRSRARQFVIEHSTYTLNIMSTKLLSFHFILIMFFNSLLWLSTLQVYGIFTFAATNATKVQGSEAIALLNWKTNLDKQSQASLSTWSIISSPCNWKGIVCDEKTNYVTIINLANFGLKGTLLSLNFSSFPMLQTLHISYNFFHGTIPHQIGNLPKISKLKMSHNLFNGSIPQEIGTLRNLSYLHIAICKLIGSIPSTIGMLINLVELDLSANYLSGKIPSIKNLMNLQQLVLYGNSLSGPIPMDLGTISSVRTIKLLSNKFSGEIPSSIGNLNNLRKLQLSYNQLYGSIPSTIGNLTKLIQLSLSQNQISGSIPSSLGNLINLEMLSLSENHLSGPIPSTFGNLTKLTFLLLHMNKLNGSISQAMKNITNLKSLQLSSNDFIGQLPHQICLGGSLRNFSANENHFSGLVPITLKNCSSLVRLNLADNMLVGNISDDFGVYPNLSYIDLSHNYFHGKILQSWRKSHNLIGLRISNNNLSGTIPPELGQAPKLQSLQLSSNHLTGKIPKELCNLTSLYELSISNNELYGKIPKEIGFMQGLGNLNLAENSLSGSIPKQIGKLLKLVHLNLSNNKFMEGIPHEFNRLQSLEDLDLGGNLLSGQIPEDIGKLQKLNTLNLSHNNLSGNIPSNFKDMISLTNVSISYNQLEGPIPNNQVFSKAPFEALRNNKGLCGNSSSLFPCVVSHHNTKSKHKSVMILILFLFLIVFLVGGSLYIHWKKARKLKKQAREEQEQKQIEDVFSIWSYDGKMVYENIIEATEDFDEKYLIGEGGSGLVYKANLASGQVVAVKKLHAEVESEMNNFTAFTNEVKALTQIKHRNIVKLYGFCSHPRHSFVVYEFLEGGSLDNVMRLDTQATTFDWKKRVNVVKGVTNALYHMHHGCSPPIVHRDISSKNVLLDLDCEAYISDFGTAKILNLDSHNSTTFAGTYGYAAPELAYTHEVNEKCDVFSFGVLCLEIIIGKHPGDLISTFFSSSEAPKAYNLLLKDVLDQRLPLPENSVAKDVILIAKMGFACLSDNPHSRPTMKQVYNMFVMPKSPSMETFRIVTLGQLLN* 1061
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2254 1060 SUPERFAMILY L domain-like 404 682 - -
Tpr4g2254 1060 Pfam Protein kinase domain 771 1037 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g2254 1060 SMART LRR_typ_2 522 546 IPR003591 -
Tpr4g2254 1060 SMART LRR_typ_2 330 353 IPR003591 -
Tpr4g2254 1060 SMART LRR_typ_2 306 329 IPR003591 -
Tpr4g2254 1060 SMART LRR_typ_2 378 402 IPR003591 -
Tpr4g2254 1060 SMART LRR_typ_2 618 641 IPR003591 -
Tpr4g2254 1060 SMART LRR_typ_2 570 593 IPR003591 -
Tpr4g2254 1060 SMART LRR_typ_2 282 305 IPR003591 -
Tpr4g2254 1060 SMART LRR_typ_2 594 617 IPR003591 -
Tpr4g2254 1060 SMART LRR_typ_2 139 163 IPR003591 -
Tpr4g2254 1060 ProSitePatterns Tyrosine protein kinases specific active-site signature. 893 905 IPR008266 GO:0004672|GO:0006468
Tpr4g2254 1060 Gene3D Ribonuclease Inhibitor 379 689 IPR032675 -
Tpr4g2254 1060 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 37 1058 - -
Tpr4g2254 1060 ProSiteProfiles Protein kinase domain profile. 769 1040 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g2254 1060 SUPERFAMILY L domain-like 94 440 - -
Tpr4g2254 1060 Gene3D Ribonuclease Inhibitor 324 378 IPR032675 -
Tpr4g2254 1060 SMART LRR_sd22_2 594 617 - -
Tpr4g2254 1060 SMART LRR_sd22_2 211 236 - -
Tpr4g2254 1060 SMART LRR_sd22_2 570 589 - -
Tpr4g2254 1060 SMART LRR_sd22_2 306 332 - -
Tpr4g2254 1060 Pfam Leucine rich repeat 284 343 IPR001611 GO:0005515
Tpr4g2254 1060 Pfam Leucine Rich Repeat 500 522 IPR001611 GO:0005515
Tpr4g2254 1060 Gene3D Ribonuclease Inhibitor 231 323 IPR032675 -
Tpr4g2254 1060 ProSiteProfiles Leucine-rich repeat profile. 213 235 IPR001611 GO:0005515
Tpr4g2254 1060 ProSitePatterns Protein kinases ATP-binding region signature. 775 798 IPR017441 GO:0005524
Tpr4g2254 1060 SUPERFAMILY Protein kinase-like (PK-like) 750 1039 IPR011009 -
Tpr4g2254 1060 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 37 1058 - -
Tpr4g2254 1060 Gene3D Phosphorylase Kinase; domain 1 728 847 - -
Tpr4g2254 1060 Pfam Leucine rich repeat N-terminal domain 73 111 IPR013210 -
Tpr4g2254 1060 Gene3D Transferase(Phosphotransferase) domain 1 848 1049 - -
Tpr4g2254 1060 Gene3D Ribonuclease Inhibitor 71 230 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2254 Tpr-Chr4 23632741 23636840 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2254 54 941 Receptor kinase-like Gene Family AT4G08850 43.750 0.0 718
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Tpr4g2254 Pkinase 8.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2254 - - gmx:100800924 1294.64