Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2247 ATGATGTTAGGTACAAGACCATTTAACACACAACACAAAGGTATCAACAAATACGCGTTCTTTGAATTCCACACACAAAACAAAACCCAGAAAACAACATCAATAAATGAACCAATATTAAACCTCAACTCAACCTATGAACCCAAACCAAACCATATCAAAAACAATCTCAACATGTCATCATATTCAAATCCAACCTTAACAACACTAATCATAATCCTCCTCACAACAATTTCCTTCACCTTAATCCCAAAAACAAATTCCCAACAAGAATACGTAAACAACAGACAACTAGATTGTGATAACACATACACTTCAACCTTAGGCAACATTTGCAACAGCATCAATTCATGTCAATCATATCTCACATTCAAATCAACACCAAATTACAACACACCCTCTTCCATTTCAAATCTCCTCAACACAACACCTTCCCTCATCTCACAATCCAACAACATCCCCACCGTCCAATCATTCCCCTTAGACACAATCACAACCGTTCCTGTTAACTGTTCTTGTTCAGGTAACAAAAACTACTATCAACATAACACTACCTACACTTTGAAAACCCTCGGTGAAACATATTTCACCGTCGCTAATATTACTTACCAAGCTTTAACAACTTGTCAAGCTCTTATTGCTCAGAATCCTTCTCATGCTGTTCGAGATCTCAATCCTGGTGACAAGATTACGGTTCCTTTGAGATGTGCTTGTCCCACGAAAAAACAGAGTGATGAAGGATTCAAGTATCTTCTCACATATTTGGTTTCTGAAGGTGAATCAGTTTCTTCCATTGCTGATATTTTTGGAGCTGATCTACAAAGTGTTTATGAAGCTAATGAACTTTCTTCAACTTCCATAATTTACTACTTCACACCACTTTTAATCCCTCTCAAAAATGAACCACCGAAAAAAATCATAAAACAAGCTTCACCGCCGGAGACGGTGGAGCTACCGGATTCCGGTGGTTCATCCTCTTCCAAGAAATGGGTCATCGTCGGTGTCGCGGTTGGAGTTGTCGTTTTGATTCTGGTAGGTCTTGCTCTGTTTTTCCTCTGTTTCCGGCGACGAAAGCAACCGGAGCTACCACCGTCGACGGTTAAGAAATTTTCAGATTCTGATACGAAAAAGATTTCAGATTTTAATTCCACAACAACAAATACTCAATCTTGGTCCCTTTCTTCTGAGGGGATTCGATATGCGGTTGATTCGTTGACTAAGTATAAATATGAAGAATTGCAAAATGCTACAAATTTTTTCAGTGAAGAGAATAAGATTAAAGGTTCTGTTTATAGAGCTTCTTTTAAAGGTGATGATGCTGCTGTTAAGATTCTTAAAGGTGATGTTTCATCTGAGATAAACATTTTGAAGAGAATTAATCATGCTAATATTATAAGATTATCTGGTTTTTGTGTCTACAAAGGTAACACTTATCTTGTTTATGAATTTGCTGAGAATAAATCTCTTAATGATTGGCTTCACATTGAGAAAGTGAAATCTAATTCTATGTTTTTGAGTTGGTTTCATAGAGTTCAAATTGCTCATGATGTAGCTGATGCACTTAATTATCTTCATAATTATGCTAATCCACCACATGTTCACAAGAATTTGAAAAGTGGTAATGTTCTTTTAGATAGAAATTTTAGAGGTAAAGTTTCAAATTTTGGTTTAGCAAGAGTTATGGAGAATGAAGGTGAAGAAGAAGAAGGGTTTCAATTAACAAGACATGTAATAGGAACACAAGGTTATATGGCACCTGAGTATATTGAGAATGGTTTAATTACTCCAAAAATGGATGTTTTTGCATTTGGTGTTGTGATTCTTGAGCTTCTTTCTGGTAGAGAAGTTGTTAATGATGATAAACTTTTGTCTTCAAGTTTTGAGCAAGTTTTTGAAGGGGAAAATGTTAGAGAGAAACTTAGAGGTTTTATGGATCCAAATTTGAGAGATGAATATCCTTTGGAACTTGCTTATTCAATGGCTGAGATTGCTAAAAGATGTGTTGCTAAAGATCTTAATTTAAGACCTAATGTTTCTGAGGTTTTTATGGTTTTGTCTAAGATTCAATCTTCTACATTGGATTGGGATCCTTCTGATGAATTTGAACGGTCTAGATCTGGTAGTCATGTTTCTGATAGTAAATATTTTAGTGCCAATGTATAA 2163 0.356 MMLGTRPFNTQHKGINKYAFFEFHTQNKTQKTTSINEPILNLNSTYEPKPNHIKNNLNMSSYSNPTLTTLIIILLTTISFTLIPKTNSQQEYVNNRQLDCDNTYTSTLGNICNSINSCQSYLTFKSTPNYNTPSSISNLLNTTPSLISQSNNIPTVQSFPLDTITTVPVNCSCSGNKNYYQHNTTYTLKTLGETYFTVANITYQALTTCQALIAQNPSHAVRDLNPGDKITVPLRCACPTKKQSDEGFKYLLTYLVSEGESVSSIADIFGADLQSVYEANELSSTSIIYYFTPLLIPLKNEPPKKIIKQASPPETVELPDSGGSSSSKKWVIVGVAVGVVVLILVGLALFFLCFRRRKQPELPPSTVKKFSDSDTKKISDFNSTTTNTQSWSLSSEGIRYAVDSLTKYKYEELQNATNFFSEENKIKGSVYRASFKGDDAAVKILKGDVSSEINILKRINHANIIRLSGFCVYKGNTYLVYEFAENKSLNDWLHIEKVKSNSMFLSWFHRVQIAHDVADALNYLHNYANPPHVHKNLKSGNVLLDRNFRGKVSNFGLARVMENEGEEEEGFQLTRHVIGTQGYMAPEYIENGLITPKMDVFAFGVVILELLSGREVVNDDKLLSSSFEQVFEGENVREKLRGFMDPNLRDEYPLELAYSMAEIAKRCVAKDLNLRPNVSEVFMVLSKIQSSTLDWDPSDEFERSRSGSHVSDSKYFSANV* 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2247 720 ProSiteProfiles Protein kinase domain profile. 339 693 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g2247 720 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 78 706 - -
Tpr4g2247 720 CDD LysM 253 289 IPR018392 -
Tpr4g2247 720 Pfam Protein kinase domain 447 681 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g2247 720 Gene3D Transferase(Phosphotransferase) domain 1 484 704 - -
Tpr4g2247 720 PANTHER PROTEIN LYK5 78 706 - -
Tpr4g2247 720 SMART LysM_2 185 233 IPR018392 -
Tpr4g2247 720 SMART LysM_2 253 297 IPR018392 -
Tpr4g2247 720 ProSiteProfiles LysM domain profile. 252 296 IPR018392 -
Tpr4g2247 720 SUPERFAMILY LysM domain 252 297 IPR036779 -
Tpr4g2247 720 SUPERFAMILY Protein kinase-like (PK-like) 389 682 IPR011009 -
Tpr4g2247 720 Pfam LysM domain 254 297 IPR018392 -
Tpr4g2247 720 Gene3D LysM domain 252 307 IPR036779 -
Tpr4g2247 720 Gene3D Phosphorylase Kinase; domain 1 379 483 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2247 Tpr-Chr4 23566754 23569115 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2247 66 706 Receptor kinase-like Gene Family AT2G33580 51.714 0.0 608
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Tpr4g2247 Pkinase 1.2e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2247 - - gmx:100818534 853.588