Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2236 ATGGAACTGAGATTCATCTTCTCACTTTCCTTCTTGTTACTATCTTCAACATCATTCATAACAGAATCAAAGTGTAACAAAGGTTGTAACTTAGCTCTAGCTTCTTACACCTTAACTAATGATGTCAACCTCACATATATTTCAAACATTATGAAATCTAATGTTCTTAGAAAACCACAAGACATCATCATCACCAACAACAAAAGCAAAAGCAAAAGAGTCAATGTTCCTTTCCCTTGTGATTGTATCAATGGAGAGTTTCTTGCTCATACTTTTGTATATCAGTTTCAGCCAGGTGAAACATATACATCAGTTGCAGAAGATGATTTTTCCAATTTGACAACTGATGTGTGGCTGCAAAACTTCAACATTTATAGACCAACAAATATTCCTGATTTTGGAATGATTAATGTTTCTGTTAATTGTTCTTGTGGGAACAGAAAGGTTTCTAAGGATTATGGTTTGTTTATCACATATCCACTTAGAAGTGAGGATACTTTGGAGTCTATTGCAAAGGATACCGAGATTGCGGCTGATTTGTTGCAGAGGTATAACCCTGGTGTGAATTTCAGCCAAGGAAGTGGTCTTGTTTTTATTCCAGGGAAAGATCAAAATGGAAGCTATATGCCCCTTCACTCGAGCACAATAGGCATTATAGTGGAAAACTCACTAGAGTTTTCATACGAAGAACTATCCGTTGCTACAAATAACTTCAGTGAGGATAATAAAATTGGTGAAGGTGGTTTTGGAGAAGTCTTTTATGCCGAGCTGAGAGGACAGATAGCCGCTGTCAAGAAGATGAAGATGAAAGCATCAAAAGAATTTTATGCTGAATTGAAAGTCTTAACTCGTGTTCATCACTTGAACCTGGTAAGGCTGATTGGATATTGTGTTGAAGGTTTTCTCTTCCTTGTCTATGAATACATTGACAATGGAAACTTAAGTCAAAATCTTCGCGATTTAGAGAGAGAACCTTTGCCATGGTCTACAAGGATGCAAATCGCTCTTGATTCAGCTCGAGGTCTTGAATATATTCACGAGCATACCGTGCGTGTATATATCCATCGCGACATAAAGTCAGAAAATATTTTATTAGACAAAAACTTTCGTGCAAAGGTTGCAGATTTTGGATTATCCAAACTTGCTGATGTTGAAAATTCAACTTCATCTGCTATAGTTGCGGAGGGTACATTCGGTTACATGCCACCTGAAAATGCATACGGACATATTTCTCGCAAGATAGATGTATATGCTTTCGGAGTTGTTCTTTATGAACTAATTTCTGCTAAAGCAGCTGTGATCAAGATCGATAAAAACGAGTTCAAGAGCCTTGAGATTAGGACTAATGAATCTGTTGATGAATACAAGAGCCTTGTAGCTTTGTTTGATGAAGTTATTGATGATGAAGAAGGTCTAAGAAAACTGGTTGATCCGAGGCTAGGAGATAACTATTCAATTGATTCCATAAAAAAGATGACACAGCTTGCCAAGACTTGCACGAACCGAGATCCGAAACAACGTCCAAGAATGAGAGCTGTTATGGTTTCTCTTATGAAACTAAATTCTTCAATTGATGATAGAAGTATGATAGTTAGTGAAGCATTGAGTCCCACCATGGAGCATGATGACTAA 1632 0.3713 MELRFIFSLSFLLLSSTSFITESKCNKGCNLALASYTLTNDVNLTYISNIMKSNVLRKPQDIIITNNKSKSKRVNVPFPCDCINGEFLAHTFVYQFQPGETYTSVAEDDFSNLTTDVWLQNFNIYRPTNIPDFGMINVSVNCSCGNRKVSKDYGLFITYPLRSEDTLESIAKDTEIAADLLQRYNPGVNFSQGSGLVFIPGKDQNGSYMPLHSSTIGIIVENSLEFSYEELSVATNNFSEDNKIGEGGFGEVFYAELRGQIAAVKKMKMKASKEFYAELKVLTRVHHLNLVRLIGYCVEGFLFLVYEYIDNGNLSQNLRDLEREPLPWSTRMQIALDSARGLEYIHEHTVRVYIHRDIKSENILLDKNFRAKVADFGLSKLADVENSTSSAIVAEGTFGYMPPENAYGHISRKIDVYAFGVVLYELISAKAAVIKIDKNEFKSLEIRTNESVDEYKSLVALFDEVIDDEEGLRKLVDPRLGDNYSIDSIKKMTQLAKTCTNRDPKQRPRMRAVMVSLMKLNSSIDDRSMIVSEALSPTMEHDD* 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2236 543 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 214 528 IPR044812 GO:0019199|GO:0045087
Tpr4g2236 543 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 5 217 IPR044812 GO:0019199|GO:0045087
Tpr4g2236 543 ProSitePatterns Serine/Threonine protein kinases active-site signature. 353 365 IPR008271 GO:0004672|GO:0006468
Tpr4g2236 543 SUPERFAMILY Protein kinase-like (PK-like) 216 517 IPR011009 -
Tpr4g2236 543 Pfam Protein tyrosine and serine/threonine kinase 241 515 IPR001245 GO:0004672|GO:0006468
Tpr4g2236 543 ProSiteProfiles Protein kinase domain profile. 238 524 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g2236 543 PANTHER LYSM RECEPTOR KINASE 1B 5 217 - -
Tpr4g2236 543 PANTHER LYSM RECEPTOR KINASE 1B 214 528 - -
Tpr4g2236 543 Gene3D Transferase(Phosphotransferase) domain 1 309 535 - -
Tpr4g2236 543 SMART serkin_6 238 518 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g2236 543 Coils Coil 254 274 - -
Tpr4g2236 543 ProSitePatterns Protein kinases ATP-binding region signature. 244 266 IPR017441 GO:0005524
Tpr4g2236 543 Gene3D Phosphorylase Kinase; domain 1 212 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2236 Tpr-Chr4 23416558 23429815 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2236 1 523 Receptor kinase-like Gene Family AT3G21630 46.230 4.82e-172 498
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Tpr4g2236 PK_Tyr_Ser-Thr 8.4e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2236 - K13429 mtr:MTR_5g086540 707.212