Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2234 ATGAAACTAAAAAATGTGTTACTATTGGTCTTTCTATTTGTTGAATGTGTTTTTTTCAAAGTTGAATCAAAGTGTGTGAAAGGGTGTGATATAGCTTTAGCTTCTTACTATGTCTTACCTTTAGTTGAACTTCCAAGTGTAAAAAACTTTATGCAATCAAAGATTGTTACAAATTCTTCTGATATTTTAAATAAATACAATAAAGTCTTAGTAACCAATCATGGTAATATTTTTTCATTTTTTAGAATCAATATTCCATTCCCATGTGAATGTATTGGAGGTGAATTTCTTGGTCATGTGTTTGAATACACAGCGAAAGAAGGCGATACTTATGATTTGATTGCAAATACTTATTATGTAAGTTTAACAACTGTTGAGCTTTTGAAAAAGTTCAATAGTTATGATCCAAATCATATACCTGCTAAGGCTAAGGTTAATGTCACTGTCAATTGTTCTTGTGGGAATAGCCAAGTTTCAAAAGATTATGGCTTGTTTATTACATATCCACTTAGAACTGGTGATACTCTTAAGAAGATTGCTAATGAGTCTAAACTTGATGAAGGGTTGTTACAGAATTACAATCCTGGTGTCGATTTCAGCAAAGAGAGTGGGATTGTGTTCATTCCAGGAAGAGATCAAAATGGAGATTATGTTCCCTTATATCCTAGGTTTGGCCTTTTGAGTTCATATTATGATGATTATTTTTGGCACAAAAAATATGAGAAAGTAAAAACGGTTAATGCCTCGTTCTATATATACGCAGGTCTTGCTAAGGGCGCAGCGGTTGGTATATCTATAGCAGGAATATTTGGGTTTGTATTATTTGTTATCTGTATATATGTTAGATACATTAAGAAGAAGGAAGAAGAGAAAGATAAACTTCCTCGAATTTCTATGAAGCTTTCAACTCAAGATGGTAGTGGAGAATATGAAACTTCCAGTGGCACTGGTAGTGCTACTGGCCTTACAGGTATTATGGTGGCAAAGTCAACAGAGTTTTCATATCAAGAACTAGCCAAAGCTACAAATAACTTCAACTTGGATCATAAAATTGGTCAAGGTGGATTTGGAGCTGTTTATTATGCAGAACTTAGAGGCGAGAAAACAGCAATTAAGAAGATGGACGTACAAGCGTCGACAGAATTTCTTTGTGAGTTGAAGGTCTTAACACATGTTCATCACTTGAATCTGGTACGTTTGATTGGATATTGCGTTGAGGGATCACTTTTCCTTGTATACGAACATATTGACAATGGAAACTTGGGTCATTATTTGCACGGAATAGGTAAAGAACCATTACCATGGTCAAGTAGAGTTCAAATTGCTCTAGATTCAGCAAGAGGCCTTGAATACATTCATGAGCACACTGTGCCTGTGTATATCCATCGTGATGTAAAATCAGCAAATATATTGATAGACAAAAACTTGCGCGGAAAGGTTGCAGATTTTGGCTTAACCAAACTTATTGAAGTTGGAAGCTCTACACTTCACACTCGTCTTGTTGGAACTTTCGGATACATGCCACCAGAGTATGCTCAATATGGCGATATTTCTCCGAAAATAGATGTATATGCTTTTGGAGTTGTTCTTTTTGAACTTATTTCTGCAAAGAATGCTGTTCTAAGGACAGGTGAAACTGTTGCTGAATCAAAGGGTCTTGTAGCCTTGTTTGGAGAAGCACTTAATCAAATTGATCCTTTAGAAGGTCTTCGCAAACTTGTGGATCCTAGGCTTAAAGAAAACTATCTAATTGAAGATGTTCTCAAGATGGCTGAACTTGGGAGAGCATGTACACGAGACAATCCGTTACTACGCCCAAGTATGAGATCTGCAGTTGTGGCTCTTATGAGACTTTCACCACCAACCCAAGATTGTGATGATGATGATGATGATACTTCCTATGAAAATCAAACTATCATAAATCTATTGTCAGTGAGATGA 1941 0.3581 MKLKNVLLLVFLFVECVFFKVESKCVKGCDIALASYYVLPLVELPSVKNFMQSKIVTNSSDILNKYNKVLVTNHGNIFSFFRINIPFPCECIGGEFLGHVFEYTAKEGDTYDLIANTYYVSLTTVELLKKFNSYDPNHIPAKAKVNVTVNCSCGNSQVSKDYGLFITYPLRTGDTLKKIANESKLDEGLLQNYNPGVDFSKESGIVFIPGRDQNGDYVPLYPRFGLLSSYYDDYFWHKKYEKVKTVNASFYIYAGLAKGAAVGISIAGIFGFVLFVICIYVRYIKKKEEEKDKLPRISMKLSTQDGSGEYETSSGTGSATGLTGIMVAKSTEFSYQELAKATNNFNLDHKIGQGGFGAVYYAELRGEKTAIKKMDVQASTEFLCELKVLTHVHHLNLVRLIGYCVEGSLFLVYEHIDNGNLGHYLHGIGKEPLPWSSRVQIALDSARGLEYIHEHTVPVYIHRDVKSANILIDKNLRGKVADFGLTKLIEVGSSTLHTRLVGTFGYMPPEYAQYGDISPKIDVYAFGVVLFELISAKNAVLRTGETVAESKGLVALFGEALNQIDPLEGLRKLVDPRLKENYLIEDVLKMAELGRACTRDNPLLRPSMRSAVVALMRLSPPTQDCDDDDDDTSYENQTIINLLSVR* 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2234 646 SMART LysM_2 102 148 IPR018392 -
Tpr4g2234 646 Pfam LysM domain 171 198 IPR018392 -
Tpr4g2234 646 Pfam LysM domain 103 141 IPR018392 -
Tpr4g2234 646 PANTHER LYSM DOMAIN RECEPTOR-LIKE KINASE 3 10 629 - -
Tpr4g2234 646 ProSitePatterns Serine/Threonine protein kinases active-site signature. 460 472 IPR008271 GO:0004672|GO:0006468
Tpr4g2234 646 SUPERFAMILY Protein kinase-like (PK-like) 326 615 IPR011009 -
Tpr4g2234 646 ProSiteProfiles Protein kinase domain profile. 345 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g2234 646 ProSitePatterns Protein kinases ATP-binding region signature. 351 373 IPR017441 GO:0005524
Tpr4g2234 646 ProSiteProfiles LysM domain profile. 101 147 IPR018392 -
Tpr4g2234 646 Gene3D Transferase(Phosphotransferase) domain 1 416 640 - -
Tpr4g2234 646 CDD LysM 103 132 IPR018392 -
Tpr4g2234 646 Gene3D Phosphorylase Kinase; domain 1 325 415 - -
Tpr4g2234 646 SMART serkin_6 345 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g2234 646 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 10 629 IPR044812 GO:0019199|GO:0045087
Tpr4g2234 646 Pfam Protein tyrosine and serine/threonine kinase 346 536 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2234 Tpr-Chr4 23389572 23393265 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2234 1 646 Receptor kinase-like Gene Family AT3G21630 50.767 0.0 618
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Tpr4g2234 PK_Tyr_Ser-Thr 1.4e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2234 - K13429 gmx:100776847 904.434