Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2229 ATGGCTAGAATCCAAAGAAAGCTTTTTCCAACAGAAACTACTACAAACCAAACATTAGATTGTTATGGCTTTTGTGACCCTTCATGTCCTTCAAATTGTTACACTAATGGAAATTACTATTTCTCACCCCCACCACTAGAACACACCACACAAGTTTCCTCTTACTTCATCATCCTCATTTCATTATTCTCATTGATTTTTATCATCATTGGTTTTTATGTGATCAAAGTGAAATGCTATAATGAAATGTGTGGTTGGAGAATTAATAACTCTATTCGCTCACAACCTGAAAACTCCGAAGAATTTCTCAATGAAAATCAGGGCGATCGCAATCACGATCACCCTGTGTGGCTCATTGCTACAGTTGGTTTGCAACAATCGATTATAAATTCGATTACGGTTTGCAAGTATCGAAAAAATGAAGGGTTAATTGAAGGAACAGAATGTTCTATTTGTTTGAATGAGTTTCATGAAGATGAAACTTTAAGACTATTACCAAAGTGTAGTCATGCTTTTCACATATCTTGTATTGATACTTGGTTAAGATCTCATACTAATTGTCCTCTTTGTCGAGCCGGTATTGTTTCGAACAATATTAATCCCGAAGTAACCGAATCGAATTTCGGACAAGAAAATAACAACTTGGGAAGAAATCAAGATACTCAAATGGATAATAATCCAAGGAATGATCAACAAGGTGTGGTAAGTAACAATATTGTTATCAATGTGGCATTTGAAAATAGGGTTGGAACAATAGAGGAATCAAGTGATGAATCAAATTACAACAAGGAGCAAATTATGAATGATGAGATGAAAATTGAGGAGGGTTCTGTTTCAACTGATCCTAGAAGCCATCTTTGGAAGGTTATTACTCAAAAAAATAGTAAAACAATGCGTAGGTGTTCAATTGAAGAGCTTTTGCATATAAGGCCAGTAGCTATGAAAAAGTCTTTCACTCTACATGGAAGGAAGAGTTTTAAAACAAGATATGTGACTATGAATTAA 1005 0.3453 MARIQRKLFPTETTTNQTLDCYGFCDPSCPSNCYTNGNYYFSPPPLEHTTQVSSYFIILISLFSLIFIIIGFYVIKVKCYNEMCGWRINNSIRSQPENSEEFLNENQGDRNHDHPVWLIATVGLQQSIINSITVCKYRKNEGLIEGTECSICLNEFHEDETLRLLPKCSHAFHISCIDTWLRSHTNCPLCRAGIVSNNINPEVTESNFGQENNNLGRNQDTQMDNNPRNDQQGVVSNNIVINVAFENRVGTIEESSDESNYNKEQIMNDEMKIEEGSVSTDPRSHLWKVITQKNSKTMRRCSIEELLHIRPVAMKKSFTLHGRKSFKTRYVTMN* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2229 334 Pfam Ring finger domain 148 191 IPR001841 -
Tpr4g2229 334 ProSiteProfiles Zinc finger RING-type profile. 149 191 IPR001841 -
Tpr4g2229 334 SUPERFAMILY RING/U-box 139 197 - -
Tpr4g2229 334 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 124 199 IPR013083 -
Tpr4g2229 334 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 5 328 - -
Tpr4g2229 334 CDD RING-H2_EL5_like 148 191 - -
Tpr4g2229 334 SMART ring_2 149 190 IPR001841 -
Tpr4g2229 334 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 5 328 IPR044675 -
Tpr4g2229 334 SMART FANCL_C_2 145 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2229 Tpr-Chr4 23326300 23327389 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2229 1 195 C3H Transcription Factor Family AT1G72220 47.321 3.88e-61 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2229 - - mtr:MTR_5g064890 536.569