Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2216 ATGACATATAGAACTAGTTTTAGCAGTAGAATTGCTACCCTCTTGTTATTGACTATTTCCTTCTTGCATGGTGCTACTACTCTTACCTCTGATGGGTTGACTCTGTTGTTATTGATGAGAAAGTGGACTTCTGTTCCTCCTCACATCAATTCTAGCTGGAATTCTTCTGATTCCAATCCATGTTCATGGGTTGGTGTTCAATGTGACCATACCCATAACGTCATTTCCCTTAATCTCACTAGTCATGGGATTTTTGGTCAACTTGGACCGGAAATTGGAAACCTTTATCACTTGCAGACCCTTTTGTTGTTGGGTAATGGTTTCTCAGGAAAAGTGCCTTTAGAGTTAAGCAACTGTAGTTTGCTTGAGAATTTAGATCTTTCTGAGAACAGATTTAGTGGAAAGATACCGTATAGTTTGAAAAAGTTGCAAAATTTACAGTTAATAAGATTGTCTTCCAATATACTGACTGGCGAAATTCCAGATTCTTTGTTTGAAATTCCTTCCCTTAAAGAAGTGAGTCTACACAGTAACCTACTTAGTGGTCCTATTCCAACCAATATTGGAAACTTGACAAATCTGTTAAGGTTGTATCTATATGGTAATCAGTTGTCAGGGGCTATTCCTTCATCTCTTGGTAATTGCAGTAAGCTAGAGGACCTTCAACTGTCTTTCAACCGTTTGAGAGGCGAAATTCCAGTCACTATTTGGAGAATTCCTAGTCTTGTGCACATCTTGGTTCACAACAATAGCCTCTCTGGGGAACTACCTTTTGAAATGACAAACCTTAAGTATCTAAAAAATATCTCATTGTTTGAAAATCAGTTCTCAGGAGTCATACCTCAAAGCTTGGGAATCAACAGCAGAATAGTGAAGTTGGACTGTATGAATAACAAGTTCAGTGGTAATATCCCACCAAATCTTTGCTTTGGAAAGAATTTGCGCGAGCTCAATATGGGAAGAAATCAATTTCAAGGTGGCATACCTTCTGGTATAGGAAGATGTGCAACTCTAAGGAGGTTGATTCTCAATGAGAATAGTTTCAGTGGACTTCTTCCCGAGTTTGAAAGCAATTTGAATCTGAAATACATGGACATGGGCAAGAACAATATTAGTGGACAGATTCCATCAAGTTTGGGAAATTGCACAAAGCTCACATACATTAATTTGTCATGGAACAAATTTGTAGGGCCAATACCATCAGATCTTGGAAATCTTGTGAATCTTGTGATTTTGGATCTTGCTCACAACAACTTGGTAGGTCCTTTTCCACCTCAGCTGTCAAATTGTACTAAAATGGATCGTTTGAATGTGGGATTCAATTTCCTAAATGGATCGTTCCCTTCAAGTTTAAGAAGTTGGACAGGCATAACCACATTGGTATTAAGAGAAAATTACTTCACAGGAGGTATCCCGGGGTTTTTGGCAGAATTTAGCAACCTTCGCGAGTTACAACTTGGTGGAAATTTGTTTGGAGGCAAAATACCTCGAACAATGGGAACAATGCACAATCTGTTCTATGGATTGAATTTGAGTGCTAATGGCTTGTCAGGTGACATTCCTGCAGAAATTGGGAAGCTTAAACTGCTGCAAAGTCTAGACATATCCTCAAACAATTTGACAGGAAGTATAGATGCTATTGAAGGTCTTGTTTCATTAATTGAAATCAATATTTCTTACAATCTCTTCAATGGTTCTGTACCAACAGGTCTAACGAAGTTATTGAATTCCTCACCATCTTCATTCATCGGTAACCCTCTCCTTTGTTTCAGTTGTTTGAGTTGCATTGAAACTAGTTTTGTTAATCCATGTGTCTACAAATCAAGTAATCACAAAAGCATCAGTACTGTTCAAATTGTGATGATAGAACTTGGATCCTCGATATTTATTACTGTTGTGATCCTAATAATAATTCGAATTTATTTCCTCAAGATGTCATGTTCCCCACTGGTGATGGTGTTGAAGGCTATGGCTAAATTATACGATTGCTATAATTTTGGCAGAGGAATTGTGCATAAAAGCCAGCAGGGCCGAGAATCGGAAATGGCGTCTGATCTTAAGCAACAGTCTGATATTGAAAGAGGAGCTACACTTAGCCAACAGTCTTACAATGAAAGAGGAGCTGCTCCGGCGTCCGAGTTTAGCAAATGGTCCTATTATATTGAAAAAGGAGTTGGAAGGATTGGAGTCACATATGCTCGAGAATTCAATATCTCAGGCAAAGAGAAGTCGCGTACCCTTAAGGATGTAGTGTTGGAGGCTACTGAAAATCTAAATCAACGGTATATTATTGGCAAGGGAGGACATGGTACTGTGTACAAAGCCATAATTGGTCAACAGATTTTTGCTGTAAAGAAGGTTGAATTTGGACGGAACAAGAAAAAGCGGCTAAGTATCATACGTAATGAAATTGAAGTCCTTGGGATGTTTAAGCATCGAAATTTGTTGAAACATGCAGACTACTGGATTGGTGAGGAATATGGTTTAGTCTTATGTGAATTCATGAAAAATGGAAGCCTTCATGATATTTTGCATGAAAAGAAACCACCACCACCGTTAACATGGAATGTTCGGTGTAAAATAGCTGTTGGAATTGCTCAAGGACTACTATATCTGCATTATGATTGTGTTCCACGAATAGTGCACCGAGACATAAAACCAAAGAACATACTTGTTGACGACAATATGGAGCCTATCATAGCTGATTTTGGCACTGCCCTATGCAAGAAGGTGTTAGAGGATTCTAATAGTCATTCAACAATCCGGAAAATGCTTTCGTCACACGTTGTTGGTACTCCTGGCTATATTGCACCGGAGAATGCATATGATATTGTGCCGGGAAGAAAGTCGGATGTATATAGCTATGGAGTTGTTTTGCTCGAGCTATTAACCAGAAAGAAACTGTTAGTCCCGTCTTTGAATGATGAGGCAGAGGATACCCCCTTAGTGATCTGGGCTAGATCTGTATGGATGGAAACAGGCAAAATTGAGAAGATTGTTGATCCATACCTTGCAAGTGAATTTTCCAGTTCAGTAGCAATAGCCAAGCAAGTTGCTGCAGTCCTTTCATTGGCATTCCGATGCATAGAGAAGGATCCAGGAAAGAGGCCGAACATGAAAGGTGTTATTAGCATTTATAATAAGAACTTGTTTAAGCTGAGGCGTGATGAGGTTCAATATGTCGATGTGCTTGCAATTAAACTGATGGGAAATGGTAAGTTGCAGGCAGACAAGTTTGTTCGGATAGCTTCTCTAATTGTTCCAAAAATAACCTATTCTTCGCGTAGTTTAATCTTCCTTTCCTCTATCACTGGTCCAATACTCACCAAACCTTTCAACTGGTTTTTCCTTTTACGTTGGGGTCAATATAGGCATCTGCAGAAATCCTTGTACTCACAGACCAAATCATACTACTCTATAACTATAAACACTGATCAAACCGAGGCCACTGTCCAAATTAGTGTATAG 3468 0.3899 MTYRTSFSSRIATLLLLTISFLHGATTLTSDGLTLLLLMRKWTSVPPHINSSWNSSDSNPCSWVGVQCDHTHNVISLNLTSHGIFGQLGPEIGNLYHLQTLLLLGNGFSGKVPLELSNCSLLENLDLSENRFSGKIPYSLKKLQNLQLIRLSSNILTGEIPDSLFEIPSLKEVSLHSNLLSGPIPTNIGNLTNLLRLYLYGNQLSGAIPSSLGNCSKLEDLQLSFNRLRGEIPVTIWRIPSLVHILVHNNSLSGELPFEMTNLKYLKNISLFENQFSGVIPQSLGINSRIVKLDCMNNKFSGNIPPNLCFGKNLRELNMGRNQFQGGIPSGIGRCATLRRLILNENSFSGLLPEFESNLNLKYMDMGKNNISGQIPSSLGNCTKLTYINLSWNKFVGPIPSDLGNLVNLVILDLAHNNLVGPFPPQLSNCTKMDRLNVGFNFLNGSFPSSLRSWTGITTLVLRENYFTGGIPGFLAEFSNLRELQLGGNLFGGKIPRTMGTMHNLFYGLNLSANGLSGDIPAEIGKLKLLQSLDISSNNLTGSIDAIEGLVSLIEINISYNLFNGSVPTGLTKLLNSSPSSFIGNPLLCFSCLSCIETSFVNPCVYKSSNHKSISTVQIVMIELGSSIFITVVILIIIRIYFLKMSCSPLVMVLKAMAKLYDCYNFGRGIVHKSQQGRESEMASDLKQQSDIERGATLSQQSYNERGAAPASEFSKWSYYIEKGVGRIGVTYAREFNISGKEKSRTLKDVVLEATENLNQRYIIGKGGHGTVYKAIIGQQIFAVKKVEFGRNKKKRLSIIRNEIEVLGMFKHRNLLKHADYWIGEEYGLVLCEFMKNGSLHDILHEKKPPPPLTWNVRCKIAVGIAQGLLYLHYDCVPRIVHRDIKPKNILVDDNMEPIIADFGTALCKKVLEDSNSHSTIRKMLSSHVVGTPGYIAPENAYDIVPGRKSDVYSYGVVLLELLTRKKLLVPSLNDEAEDTPLVIWARSVWMETGKIEKIVDPYLASEFSSSVAIAKQVAAVLSLAFRCIEKDPGKRPNMKGVISIYNKNLFKLRRDEVQYVDVLAIKLMGNGKLQADKFVRIASLIVPKITYSSRSLIFLSSITGPILTKPFNWFFLLRWGQYRHLQKSLYSQTKSYYSITINTDQTEATVQISV* 1156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2216 1155 Pfam Protein kinase domain 762 1042 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g2216 1155 Pfam Leucine rich repeat 337 395 IPR001611 GO:0005515
Tpr4g2216 1155 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 8 1055 - -
Tpr4g2216 1155 Gene3D Transferase(Phosphotransferase) domain 1 835 1063 - -
Tpr4g2216 1155 SUPERFAMILY L domain-like 356 589 - -
Tpr4g2216 1155 Gene3D Phosphorylase Kinase; domain 1 740 834 - -
Tpr4g2216 1155 SMART serkin_6 758 1051 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g2216 1155 SUPERFAMILY Protein kinase-like (PK-like) 747 1044 IPR011009 -
Tpr4g2216 1155 ProSitePatterns Protein kinases ATP-binding region signature. 764 786 IPR017441 GO:0005524
Tpr4g2216 1155 Gene3D Ribonuclease Inhibitor 185 285 IPR032675 -
Tpr4g2216 1155 Gene3D Ribonuclease Inhibitor 31 184 IPR032675 -
Tpr4g2216 1155 Pfam Leucine rich repeat N-terminal domain 30 69 IPR013210 -
Tpr4g2216 1155 PANTHER OS08G0446200 PROTEIN 8 1055 - -
Tpr4g2216 1155 Gene3D Ribonuclease Inhibitor 362 596 IPR032675 -
Tpr4g2216 1155 Gene3D Ribonuclease Inhibitor 286 361 IPR032675 -
Tpr4g2216 1155 ProSiteProfiles Protein kinase domain profile. 758 1051 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g2216 1155 ProSitePatterns Serine/Threonine protein kinases active-site signature. 880 892 IPR008271 GO:0004672|GO:0006468
Tpr4g2216 1155 SMART LRR_typ_2 527 550 IPR003591 -
Tpr4g2216 1155 SMART LRR_typ_2 143 167 IPR003591 -
Tpr4g2216 1155 SMART LRR_typ_2 191 215 IPR003591 -
Tpr4g2216 1155 SMART LRR_typ_2 478 502 IPR003591 -
Tpr4g2216 1155 SMART LRR_typ_2 312 335 IPR003591 -
Tpr4g2216 1155 SMART LRR_typ_2 406 430 IPR003591 -
Tpr4g2216 1155 SUPERFAMILY RNI-like 76 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2216 Tpr-Chr4 23097856 23102315 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2216 106 622 Receptor kinase-like Gene Family AT1G73080 49.042 1.71e-144 462
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Tpr4g2216 Pkinase 7.8e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2216 - - mtr:MTR_5g087340 1810.04