Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2204 ATGACTAGAACTAGTTATAGCAGTAGAATTATTACACTCTTGTTGGTTATTTCCTTTTTGCACGGTGTTTCTGCTGTTAACTCTGATGGGTTGACTCTGTTGTCACTCTTGACACACTGGACTTTTGTTCCTCCTCTTATCAACTCTAGTTGGAAGGCTTCTGATTCCAATACATGCTCATGGGTTGGTGTTCAATGTGACCATACCAATAATTTGATTTCCCTTAACCTTACTGGTCATGGGATTTCTGGTCAACTTGGACCAGAAATTGGAAACCTTTATCACTTGCAGACCCTTGTGTTGTTGGGTAATGGTTTCTCAGGAAAAGTTCCTTTAGAGTTAAGTAACTGCAGTTTACTTCAGGTTTTAGACCTTGAAGGTAATAGATTCAGTGGAAATATACCATATAGTTTTAAAAACTTGCAAAATTTACAGTTCATGAGATTGTCTTCCAATATGCTGAGTGGCGAGATTCCAGATTCTTTGTTTGAAATTCCTTCCCTAAATGAAGTGAGCCTACACAGTAATCTTCTTAGTGGCCCTATTCCAACAAATATTGGAAACATGACTCAACTATTAAGGCTGTACCTATATGGTAATCAGTTATCAGGGACTATTCCTTCATCTCTTGGTAATTGCAGTAAATTAGAGGACCTTGAATTGTCTTTCAATCGATTGAGAGGGGAAATTCCGGTAAGTTTTTGGAGAATTCAAAGTCTTGTGCACATCTTGGTTCACAACAACAGCCTCTCTGGGGAGCTACCTTTCGAGATAACAAACCTCAAGTATCTAAAAAATATTTCATTGTTTAATAATCAGTTCTCAGGAGTCATACCTCAAAGTTTAGGAATCAACAGCAGCATAGTGAAGTTGGACTGTATGAATAACAAGTTCATCGGTAATATCCCACCAAATCTTTGCTTTGGAAAGCATTTGTTAGAGCTCAACATGGGAATCAATCAACTTCAAGGTCGCATACCTTCTGATGTAGGAAGATGTGCAACTCTGGCGAGGTTGTTTCTCAATGATAATAATTTCACCGGCTCTCTTCCTAAATTTGAAAGTAATCTAAACTTGAAATACATGGACATGAGCAAGAACAATATCAGTGGACCAATTCCAACAAGTTTGGAAAATTGCACAAATCTCACATACATTAATTTATCAAGGAACAAATTTGAAGGGCTAATACCGTCAAAGCTGGGAAGCCTTGTGAATCTTGTGATTTTGGATCTTTCTCACAATAACTTGCAAGGTTCTTTACCACTTTGGTTGTCAAATTGTACTAAAATGGATCGTTTTGATGTGGGATTCAATTTCCTAAATGGATCACTCCCATCAAGTTTGAGAAGTTGGAAAAACATAACTACCTTGGTATTCAGAGAAAATCACTTCACTGGAGGTATTCCGGGGTTTTTGGCAGAACTCAGCAACCTTCGCGAGTTACAACTTGGTGGAAATTTGTTTGGAGGCCAAATTCCTCGATCGATGGGAAAATTGCATAATTTGTTCTATGGATTGAACTTGAGTGCTAATGGATTGACTGGTGGCATTCCTTCAGAAATTGGTAGCCTAGGACTACTGCAAAGTCTGGATATATCCTTGAACCATTTAACAGGAAGCATTGATGCCCTTGGAGGTCTTGTTTCTTTAATTGAGGTCAATATTTCTTACAATCTCTTCAATGGTTCTGTACCAAAATTTCTAATGAAGTTATTGTATTCCTCGCCATCATCATTCATGGGTAATCCTCTCCTATGTGTCAGTTGTTTGATGAGTTGCATTAAAACTAGTTATATAAATCCATGTGTTTATACTGATCACAAAGGTATAAGTAATGTTCAAATTGTGATGATAGAACTTGGATCCTCAATATTGATTTCTGCTATTCTGGTAATCATAATTCGAAGGTGTTTCCATAGAAAGGAATCAGATACGAAAGATCTAAACCACTGGTATTATTATGATAGAGGAGCAGGAAGGATTGGAGTCAGATATGCTCACGAATCGTACATCTTAGGTGAAGAGAATCCAACCGCCCTTCCGAATCTAGTGTTGCAAGCTACAGAGAACCTAAGTGATCGGTATATTATTGGCAGAGGAGCACATGGTATTGTGTACAAAGCATTACTTGGACAACATGTTTTTGCTGTGAAAAAGTTTGAATTCACAAGCAGAAGGGAAAAGCAACTGCGTATGATGCGCAAAGAAATTGAAGTGCTTGGAATGTATAAGCATCGAAACATAATCAAATACGCAGACTATTGGATTGGCGCTTCCTACGGTTTAGTCTTATATGAATTCATGGAAAATGGAAGCCTTCATGATATTTTGCATGAAACGAATCCCCCACCACCCTTAACGTGGAAAGCTAGGTTTAACATAGCAGTTGGAATTGCCGAAGGACTGGCATATCTGCATAATAATTGTGACCCACCCATAGTGCACCGAGACATTAAATCAAAAAATATTCTTATTAATGACAATATGGATGCAATTATAGCTGATTTTGGTACTGCCCTATACAGGAAGTTGTCTGAAGATTCTTATAGTCATTCAGAAACCAGGAAAATGCTTTCGACAATCGTTGTTGGTACCCCTGGCTATATTGCACCAGAGAATGCATATGTAATAGTGCAGAGTAGAAAGTCTGATGTATATAGCTACGGCGTTGTTTTGCTCGAGATAATAACCAGAAAGAAAGTGGTAGTTCCCTGTTTGAATGATGAGACAAATGTGACCTCTTTAGTGAGCTGGGCTAGATCTTTATGGCTGGAAACAGGCAAAATTGAGTACATTGCTGATTCATATCTTGCAGAAGCATTTCCCAATTCAGAGGCACTGACCAAGCAAGTCACAACAATGTTTTTATTGGCATTGCAATGCACAGATAAGGATCTAAGAAAGAGACCAATCATGAAAGATGTTATTGGCTTGTTTAAAAAGGATATGTTTAAGTGCTGCGATGAGGAGGAATATGGCAGTGCGGCTGCAGCTGATACATCACTACAACCAACGGTATCCCACCTAAGATCGTTTGTGTATATTGAAAGCGAATATCGTGAGTGGGTAGCACAGATCGTAAACTACTGCCAAATAGAGCTGTCAAAACGGGCGGCCCGGCCAATTTCGGGCCGGCCCGGTCGGGCTTCGGGCTTCGTTGGGCCGGGCTAA 3174 0.391 MTRTSYSSRIITLLLVISFLHGVSAVNSDGLTLLSLLTHWTFVPPLINSSWKASDSNTCSWVGVQCDHTNNLISLNLTGHGISGQLGPEIGNLYHLQTLVLLGNGFSGKVPLELSNCSLLQVLDLEGNRFSGNIPYSFKNLQNLQFMRLSSNMLSGEIPDSLFEIPSLNEVSLHSNLLSGPIPTNIGNMTQLLRLYLYGNQLSGTIPSSLGNCSKLEDLELSFNRLRGEIPVSFWRIQSLVHILVHNNSLSGELPFEITNLKYLKNISLFNNQFSGVIPQSLGINSSIVKLDCMNNKFIGNIPPNLCFGKHLLELNMGINQLQGRIPSDVGRCATLARLFLNDNNFTGSLPKFESNLNLKYMDMSKNNISGPIPTSLENCTNLTYINLSRNKFEGLIPSKLGSLVNLVILDLSHNNLQGSLPLWLSNCTKMDRFDVGFNFLNGSLPSSLRSWKNITTLVFRENHFTGGIPGFLAELSNLRELQLGGNLFGGQIPRSMGKLHNLFYGLNLSANGLTGGIPSEIGSLGLLQSLDISLNHLTGSIDALGGLVSLIEVNISYNLFNGSVPKFLMKLLYSSPSSFMGNPLLCVSCLMSCIKTSYINPCVYTDHKGISNVQIVMIELGSSILISAILVIIIRRCFHRKESDTKDLNHWYYYDRGAGRIGVRYAHESYILGEENPTALPNLVLQATENLSDRYIIGRGAHGIVYKALLGQHVFAVKKFEFTSRREKQLRMMRKEIEVLGMYKHRNIIKYADYWIGASYGLVLYEFMENGSLHDILHETNPPPPLTWKARFNIAVGIAEGLAYLHNNCDPPIVHRDIKSKNILINDNMDAIIADFGTALYRKLSEDSYSHSETRKMLSTIVVGTPGYIAPENAYVIVQSRKSDVYSYGVVLLEIITRKKVVVPCLNDETNVTSLVSWARSLWLETGKIEYIADSYLAEAFPNSEALTKQVTTMFLLALQCTDKDLRKRPIMKDVIGLFKKDMFKCCDEEEYGSAAAADTSLQPTVSHLRSFVYIESEYREWVAQIVNYCQIELSKRAARPISGRPGRASGFVGPG* 1058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2204 1057 PANTHER OS08G0446200 PROTEIN 6 987 - -
Tpr4g2204 1057 SMART LRR_typ_2 141 165 IPR003591 -
Tpr4g2204 1057 SMART LRR_typ_2 525 548 IPR003591 -
Tpr4g2204 1057 SMART LRR_typ_2 404 428 IPR003591 -
Tpr4g2204 1057 SMART LRR_typ_2 189 213 IPR003591 -
Tpr4g2204 1057 SMART LRR_typ_2 476 500 IPR003591 -
Tpr4g2204 1057 ProSitePatterns Serine/Threonine protein kinases active-site signature. 814 826 IPR008271 GO:0004672|GO:0006468
Tpr4g2204 1057 Gene3D Ribonuclease Inhibitor 27 183 IPR032675 -
Tpr4g2204 1057 Pfam Protein kinase domain 697 974 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g2204 1057 SUPERFAMILY L domain-like 50 373 - -
Tpr4g2204 1057 Gene3D Ribonuclease Inhibitor 504 578 IPR032675 -
Tpr4g2204 1057 Gene3D Ribonuclease Inhibitor 285 355 IPR032675 -
Tpr4g2204 1057 SUPERFAMILY L domain-like 287 604 - -
Tpr4g2204 1057 ProSitePatterns Protein kinases ATP-binding region signature. 698 720 IPR017441 GO:0005524
Tpr4g2204 1057 Pfam Leucine rich repeat 358 417 IPR001611 GO:0005515
Tpr4g2204 1057 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 6 987 - -
Tpr4g2204 1057 Pfam Leucine rich repeat N-terminal domain 27 67 IPR013210 -
Tpr4g2204 1057 Gene3D Transferase(Phosphotransferase) domain 1 769 994 - -
Tpr4g2204 1057 ProSiteProfiles Protein kinase domain profile. 692 985 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g2204 1057 SUPERFAMILY Protein kinase-like (PK-like) 682 977 IPR011009 -
Tpr4g2204 1057 Gene3D Phosphorylase Kinase; domain 1 678 768 - -
Tpr4g2204 1057 Gene3D Ribonuclease Inhibitor 184 284 IPR032675 -
Tpr4g2204 1057 SMART serkin_6 692 985 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g2204 1057 Gene3D Ribonuclease Inhibitor 440 503 IPR032675 -
Tpr4g2204 1057 Gene3D Ribonuclease Inhibitor 356 439 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2204 Tpr-Chr4 22972061 22975860 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2204 72 991 Receptor kinase-like Gene Family AT1G73080 43.691 0.0 715
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Tpr4g2204 Pkinase 5.9e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2204 - - mtr:MTR_5g087360 1615.9