Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2188 ATGCCAGAAAATAGGCAGGTTTTGAAGAATGCTGCTTCTAATCCATCTGGTGATAACATTGAAGAAGCAATTCGGCGTTTGAAAATCAATAATAATCGGGATAGAGATGCTGCGGCTCAATCTATGCCTTATCCGGATCGACCTGGTGAACCGGATTGCTTATATTATTTGAGGACTGGAATGTGTGGTTACGGGAGTAACTGTCGCTATAACCACCCTGCTAACGTTTCACTTGTTCCTCAATATGGTGAAGAACTTCCTGAGAGAGTCGGGCAACCTGATTGTGAGTATTTTCTTAAGACAGGAACATGCAAGTATGGATCAACATGTAAATATCATCATCCTAAGGACAGGCGAGGTGCTGCACCCGTAGTATTCAATACTTTAGGTCTTCCCATGCGTCAGGAAGAAAAATCATGTCCCTATTACATGAGAACTGGTGCTTGTAAGTTTGGAGTTGCATGCAAGTTCCATCATCCACAACAGCAGGCTTCCTTTGGAGCTTATCCGGTGGCTGCGTCCCCTCCCTCAACAACTGTTACTTCATCCGGTTTTCCATATGCTGGCGGGTTTCCTGCATGGTCAGTGCCGAGAATGTCATATTTATCTGGACAGGCCATTCAATCTTATGTTCCTCCATTTATGCCTTCTTCACAAGGCATCATGCCTGCGCTGAGCTGGAGCAACTACATGGGAAGTATTAGCCCCGCAATGCCTTCTGGTTTTATTGGATCTAATCTTGTCTACGACTACATGAATCCGGCGGCGGGAGAGACACTTTCTGGTGGACAGGTAATGAATTCAACTCTTCCAGATAGACCTGATCAACCTGACTGTAAATACTTTATGAGCACCGGAACATGCAAATATGGTTCTGATTGCAAGTTCCACCACCCTAAAGAAAGAATAGCCCAAACTTTATCGGTTAATCCACTTGGCCTTCCTATGAGACCTGGTAATGCTATATGCTCTTATTACAGAATCTACGGAGTATGCAAGTTCGGTCCAACATGCAAATTTGATCATCCAGTCGTAGCAGCCATCCCTCAAAACTACGGCTTGCCTTCACCTACTTTATCGGTATTCGATCCATCTCTCCTTACCAGTCCAAGAAGGCTTTCAACCGTTCAACCAACCGAGACATCCCCATCGAAACAATCAACTGACAAGCTTCAACAATCTGATACAAAAGCTGCTACTGAAGATTCATCTAAACAAGCTGACACTACATCATCAAATTCTCGCACACCTTCGTCCGAGTCTTTGCACGAATGA 1275 0.4447 MPENRQVLKNAASNPSGDNIEEAIRRLKINNNRDRDAAAQSMPYPDRPGEPDCLYYLRTGMCGYGSNCRYNHPANVSLVPQYGEELPERVGQPDCEYFLKTGTCKYGSTCKYHHPKDRRGAAPVVFNTLGLPMRQEEKSCPYYMRTGACKFGVACKFHHPQQQASFGAYPVAASPPSTTVTSSGFPYAGGFPAWSVPRMSYLSGQAIQSYVPPFMPSSQGIMPALSWSNYMGSISPAMPSGFIGSNLVYDYMNPAAGETLSGGQVMNSTLPDRPDQPDCKYFMSTGTCKYGSDCKFHHPKERIAQTLSVNPLGLPMRPGNAICSYYRIYGVCKFGPTCKFDHPVVAAIPQNYGLPSPTLSVFDPSLLTSPRRLSTVQPTETSPSKQSTDKLQQSDTKAATEDSSKQADTTSSNSRTPSSESLHE* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2188 424 SUPERFAMILY CCCH zinc finger 52 74 IPR036855 GO:0046872
Tpr4g2188 424 ProSiteProfiles Zinc finger C3H1-type profile. 273 301 IPR000571 GO:0046872
Tpr4g2188 424 MobiDBLite consensus disorder prediction 1 20 - -
Tpr4g2188 424 PANTHER PROTEIN PHOSPHATASE RELATED 2 409 - -
Tpr4g2188 424 ProSiteProfiles Zinc finger C3H1-type profile. 317 345 IPR000571 GO:0046872
Tpr4g2188 424 SUPERFAMILY CCCH zinc finger 278 302 IPR036855 GO:0046872
Tpr4g2188 424 SUPERFAMILY CCCH zinc finger 133 163 IPR036855 GO:0046872
Tpr4g2188 424 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 92 116 IPR000571 GO:0046872
Tpr4g2188 424 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 49 73 IPR000571 GO:0046872
Tpr4g2188 424 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 321 343 IPR000571 GO:0046872
Tpr4g2188 424 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 138 161 IPR000571 GO:0046872
Tpr4g2188 424 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 275 300 IPR000571 GO:0046872
Tpr4g2188 424 Gene3D - 271 356 - -
Tpr4g2188 424 Gene3D - 46 120 - -
Tpr4g2188 424 ProSiteProfiles Zinc finger C3H1-type profile. 89 117 IPR000571 GO:0046872
Tpr4g2188 424 ProSiteProfiles Zinc finger C3H1-type profile. 134 162 IPR000571 GO:0046872
Tpr4g2188 424 SUPERFAMILY CCCH zinc finger 93 118 IPR036855 GO:0046872
Tpr4g2188 424 MobiDBLite consensus disorder prediction 370 424 - -
Tpr4g2188 424 SMART c3hfinal6 47 74 IPR000571 GO:0046872
Tpr4g2188 424 SMART c3hfinal6 136 161 IPR000571 GO:0046872
Tpr4g2188 424 SMART c3hfinal6 273 300 IPR000571 GO:0046872
Tpr4g2188 424 SMART c3hfinal6 317 344 IPR000571 GO:0046872
Tpr4g2188 424 SMART c3hfinal6 89 116 IPR000571 GO:0046872
Tpr4g2188 424 Gene3D - 121 166 - -
Tpr4g2188 424 ProSiteProfiles Zinc finger C3H1-type profile. 47 75 IPR000571 GO:0046872
Tpr4g2188 424 SUPERFAMILY CCCH zinc finger 318 343 IPR036855 GO:0046872
Tpr4g2188 424 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 26 2 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2188 Tpr-Chr4 22787998 22792358 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2188 1 406 C3H Transcription Factor Family AT1G04990 44.203 2.30e-113 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tpr4g2188 zf-CCCH 9.5e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2188 - - vra:106765262 685.256