Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tpr4g2162 | ATGGCACTCTACACCTTAAACATAATGTCCACAAAGCTTCTGTCTTTTCATTTTATTCTCATCATGTTTTTCAATTCACTTTTATGGCTTTCTACCCTCCAAGTTTATGGCATTTTCACTTTTGCTGCCACTAATGCTACAAAAGTTCAAGGTAGTGAAGCAATTGCTCTATTAAATTGGAAAACTAACCTTGACAAACAAAGCCAAGCTTCATTGTCTTCTTGGTCCATCATTTCAAGTCCTTGCAATTGGAAGGGGATTGTTTGTGATGAAAAAACCAATTATGTGACAATTATAAATCTTGCAAACTTTGGTCTTAAAGGTACTCTTTTAAGTCTCAACTTCTCATCCTTTCCTATGCTTCAAACTTTGGATATAAGTTACAACTTTTTTCATGGTACTATTCCACATCAAATTGGTAACTTGCCCAAAATTTCTAAACTAAAAATGAGTCATAATCTTTTCAATGGTTCCATTCCACAAGAAATAGGGACACTAAGGAATCTAAGTCACCTTCATATTGCAATATGTAAACTCATTGGTTCCATTCCCTCAACAATTGGAATGTTGATAAATCTTGTTGAACTTGATTTATCAGCTAATTATCTCACCGGCAAAATTCCTTCCATAAAAAACTTGATGAACTTACAACAACTTGTTCTATACGGAAATTCTCTTTCTGGACCGATTCCTATGGATTTAGGCACAATCTCTTCTCTTAGAACAATTAAATTGTTAAGCAACAATTTTTCTGGTGAAATTCCATCCTCCATAGGAAACTTGAATAATTTGAGGAAACTTCAGCTTAGTTATAATCAACTTTATGGATCAATTCCTTCTACTATAGGAAACTTGACAAAACTCATTCAATTATCACTTTCTCAAAACCAAATTTCTGGATCAATTCCATCTTCATTAGGAAACTTGATCAATCTAGAAATGCTTAGTCTTTCAGAAAATCATCTTACTGGTCCTATTCCTTCAACCTTTGGAAACTTGACCAAACTAACCTTTCTATTACTTCACATGAACAAACTTAATGGTAGCATTTCACAAGCAATGAAAAACATTACCAATTTGAAAAGCTTACAATTAAGTTCAAATGATTTCATTGGCCAATTGCCACATCAAATTTGCCTTGGTGGATCACTAAGAAACTTTTCTGCTAATGAGAATCATTTTAGTGGTTTAGTTCCGATAACCTTGAAGAATTGTTCAAGCCTTGTTAGACTCAACCTTGCAGATAATATGTTAGTTGGAAATATTTCAGATGATTTTGGTGTATATCCAAATTTGAGCTACATTGATTTGAGTCACAACTACTTTCATGGCAAAATTTTGCAAAGTTGGAGGAAAAGTCATAATCTAATTGGCCTAAGGATCTCAAATAACAATTTATCAGGTACTATACCTCCAGAACTAGGACAAGCCCCTAAGTTACAATCACTTCAACTTTCTTCAAATCACTTAACAGGAAAAATTCCTAAAGAGCTTTGTAACTTGACTTCATTGTATGAACTCTCCATTAGTAACAATGAACTTTATGGAAAAGTTCCTATAGAAATAGGATTCATGCAAGGACTTGGAAACTTGAATCTTGCAGAAAATAGTTTAAGTGGCTCAATTCCAAAACAAATTGGAAAGCTTCTCAAACTAGTTCATTTGAATTTGAGCAATAATAAGTTCATGGAAGGAATTCCACATGAATTTAACAGATTGCAATCTCTGGAAGATCTTGATCTTGGTGGAAATTTGTTAAGTGGACAAATACCCGAAGAAATTGGAAAGTTGCAAAAGTTGAACACATTGAACCTTTCTCACAATAATCTCTCTGGAAATATTCCATCTAATTTTAAAGATATGATTAGCTTGACAAATGTTAGCATATCTTATAACCAATTAGAGGGTCCAATTCCAAACAATCAAGTGTTTTCTAAGGCACCTTTTGAAGCATTGAGAAACAATAAAGGCTTGTGTGGTAATTCTTCAAGCTTGGTTCCTTGTGTGGTAAGTCATCACAATACAAAAAGTAAACACAAAAGTGTGATGATATTGATACTATTTATATTTCTTATAGTCTTCTTGGTTGGTGGTTCTTTGTATATTCATTGGAAAAAGGCAAGAAAACTTAAAAAGCAAGCTAGAGAAGAACAAGAACAAAAACAAATTGAAGATGTTTTTTCCATATGGAGTTATGATGGAAAAATGGTTTATGAAAATATCATTGAAGCAACGGAGGATTTTGATGAGAAATATCTCATTGGTGAAGGAGGTTCTGGTTTGGTTTACAAGGCTAATTTAGCATCTGGTCAAGTTGTTGCTGTGAAAAAACTTCATGCTGAAGTTGAGAGTGAAATGAACAATTTCACGGCTTTTACTAATGAGGTTAAAGCGTTGACGCAAATCAAACATCGTAACATTGTGAAGTTGTATGGATTTTGTTCGCATCCGCGCCACTCTTTTGTGGTTTATGAGTTCTTAGAAGGAGGGAGTTTGGATAATGTGATGAGACTTGATACACAAGCAACAACATTTGATTGGAAAAAGAGAGTGAATGTTGTTAAGGGTGTGACAAATGCTCTTTACCATATGCATCATGGTTGCTCTCCTCCTATTGTTCATCGTGACATATCGAGCAAAAATGTTCTTTTAGATTTGGATTGTGAAGCTTACATCTCAGACTTTGGAACTGCTAAGATTCTTAATCTTGATTCACATAATTCAACAACATTTGCAGGCACTTATGGATATGCAGCACCAGAGCTTGCATATACTCATGAAGTGAATGAGAAATGTGATGTGTTTAGTTTTGGAGTGCTATGTTTGGAAATAATTATAGGAAAGCATCCAGGGGATCTGATTTCTACATTGTTTTCATCATCTGAAGCACCAAAAGCATATAATTTACTATTGAAAGATGTATTAGACCAAAGACTTCCTCTTCCAGAAAATTCAGTTGCTAAGGATGTGATCTTGATTGCAAAAATGGGATTTGCTTGCTTGAGTGACAATCCACATTCTAGACCAACTATGAAACAAGTTTATAACATGTTTGTGATGCCAAAATCACCATCAATGGAGACATTCCGCATCGTCACACTTGGTCAACTTTTAAATTAG | 3120 | 0.341 | MALYTLNIMSTKLLSFHFILIMFFNSLLWLSTLQVYGIFTFAATNATKVQGSEAIALLNWKTNLDKQSQASLSSWSIISSPCNWKGIVCDEKTNYVTIINLANFGLKGTLLSLNFSSFPMLQTLDISYNFFHGTIPHQIGNLPKISKLKMSHNLFNGSIPQEIGTLRNLSHLHIAICKLIGSIPSTIGMLINLVELDLSANYLTGKIPSIKNLMNLQQLVLYGNSLSGPIPMDLGTISSLRTIKLLSNNFSGEIPSSIGNLNNLRKLQLSYNQLYGSIPSTIGNLTKLIQLSLSQNQISGSIPSSLGNLINLEMLSLSENHLTGPIPSTFGNLTKLTFLLLHMNKLNGSISQAMKNITNLKSLQLSSNDFIGQLPHQICLGGSLRNFSANENHFSGLVPITLKNCSSLVRLNLADNMLVGNISDDFGVYPNLSYIDLSHNYFHGKILQSWRKSHNLIGLRISNNNLSGTIPPELGQAPKLQSLQLSSNHLTGKIPKELCNLTSLYELSISNNELYGKVPIEIGFMQGLGNLNLAENSLSGSIPKQIGKLLKLVHLNLSNNKFMEGIPHEFNRLQSLEDLDLGGNLLSGQIPEEIGKLQKLNTLNLSHNNLSGNIPSNFKDMISLTNVSISYNQLEGPIPNNQVFSKAPFEALRNNKGLCGNSSSLVPCVVSHHNTKSKHKSVMILILFIFLIVFLVGGSLYIHWKKARKLKKQAREEQEQKQIEDVFSIWSYDGKMVYENIIEATEDFDEKYLIGEGGSGLVYKANLASGQVVAVKKLHAEVESEMNNFTAFTNEVKALTQIKHRNIVKLYGFCSHPRHSFVVYEFLEGGSLDNVMRLDTQATTFDWKKRVNVVKGVTNALYHMHHGCSPPIVHRDISSKNVLLDLDCEAYISDFGTAKILNLDSHNSTTFAGTYGYAAPELAYTHEVNEKCDVFSFGVLCLEIIIGKHPGDLISTLFSSSEAPKAYNLLLKDVLDQRLPLPENSVAKDVILIAKMGFACLSDNPHSRPTMKQVYNMFVMPKSPSMETFRIVTLGQLLN* | 1040 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tpr4g2162 | 1039 | Pfam | Leucine rich repeat | 263 | 322 | IPR001611 | GO:0005515 | |
| Tpr4g2162 | 1039 | SMART | LRR_typ_2 | 478 | 501 | IPR003591 | - | |
| Tpr4g2162 | 1039 | SMART | LRR_typ_2 | 357 | 381 | IPR003591 | - | |
| Tpr4g2162 | 1039 | SMART | LRR_typ_2 | 309 | 332 | IPR003591 | - | |
| Tpr4g2162 | 1039 | SMART | LRR_typ_2 | 261 | 284 | IPR003591 | - | |
| Tpr4g2162 | 1039 | SMART | LRR_typ_2 | 285 | 308 | IPR003591 | - | |
| Tpr4g2162 | 1039 | SMART | LRR_typ_2 | 597 | 620 | IPR003591 | - | |
| Tpr4g2162 | 1039 | SMART | LRR_typ_2 | 549 | 572 | IPR003591 | - | |
| Tpr4g2162 | 1039 | SMART | LRR_typ_2 | 118 | 142 | IPR003591 | - | |
| Tpr4g2162 | 1039 | SMART | LRR_typ_2 | 573 | 596 | IPR003591 | - | |
| Tpr4g2162 | 1039 | Gene3D | Ribonuclease Inhibitor | 52 | 164 | IPR032675 | - | |
| Tpr4g2162 | 1039 | ProSiteProfiles | Leucine-rich repeat profile. | 192 | 214 | IPR001611 | GO:0005515 | |
| Tpr4g2162 | 1039 | ProSiteProfiles | Protein kinase domain profile. | 748 | 1019 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Tpr4g2162 | 1039 | Pfam | Leucine Rich Repeat | 479 | 501 | IPR001611 | GO:0005515 | |
| Tpr4g2162 | 1039 | SUPERFAMILY | L domain-like | 403 | 660 | - | - | |
| Tpr4g2162 | 1039 | ProSitePatterns | Protein kinases ATP-binding region signature. | 754 | 777 | IPR017441 | GO:0005524 | |
| Tpr4g2162 | 1039 | Gene3D | Ribonuclease Inhibitor | 165 | 241 | IPR032675 | - | |
| Tpr4g2162 | 1039 | Pfam | Leucine rich repeat N-terminal domain | 52 | 90 | IPR013210 | - | |
| Tpr4g2162 | 1039 | PANTHER | LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED | 16 | 1037 | - | - | |
| Tpr4g2162 | 1039 | ProSitePatterns | Tyrosine protein kinases specific active-site signature. | 872 | 884 | IPR008266 | GO:0004672|GO:0006468 | |
| Tpr4g2162 | 1039 | Gene3D | Ribonuclease Inhibitor | 242 | 381 | IPR032675 | - | |
| Tpr4g2162 | 1039 | Gene3D | Ribonuclease Inhibitor | 382 | 669 | IPR032675 | - | |
| Tpr4g2162 | 1039 | Gene3D | Transferase(Phosphotransferase) domain 1 | 827 | 1028 | - | - | |
| Tpr4g2162 | 1039 | SUPERFAMILY | RNI-like | 99 | 451 | - | - | |
| Tpr4g2162 | 1039 | Pfam | Protein kinase domain | 750 | 1016 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Tpr4g2162 | 1039 | Gene3D | Phosphorylase Kinase; domain 1 | 707 | 826 | - | - | |
| Tpr4g2162 | 1039 | SUPERFAMILY | Protein kinase-like (PK-like) | 729 | 1018 | IPR011009 | - | |
| Tpr4g2162 | 1039 | PANTHER | LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN | 16 | 1037 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Tpr4g2162 | Tpr-Chr4 | 22487252 | 22491559 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Tpr4g2162 | 33 | 920 | Receptor kinase-like Gene Family | AT4G08850 | 44.289 | 0.0 | 729 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| PK | RLK-Pelle_LRR-XI-1 | Tpr4g2162 | Pkinase | 6.9e-46 | CL0016 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tpr4g2162 | - | - | gmx:100800924 | 1292.33 |